HL_8OEQ_033

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUUUUUC

Length

8 nucleotides

Bulged bases

8OEQ|1|1|U|1566

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_033 not in the Motif Atlas

Homologous match to HL_8C3A_034

Geometric discrepancy: 0.0826

The information below is about HL_8C3A_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41725.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8OEQ|1|1|G|1562
8OEQ|1|1|A|1563
8OEQ|1|1|U|1564
8OEQ|1|1|U|1565
8OEQ|1|1|U|1566
8OEQ|1|1|U|1567
8OEQ|1|1|U|1568
8OEQ|1|1|C|1569

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25