HL_8OEQ_051

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCAAAC

Length

8 nucleotides

Bulged bases

8OEQ|1|1|C|2517, 8OEQ|1|1|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_051 not in the Motif Atlas

Homologous match to HL_8C3A_053

Geometric discrepancy: 0.1006

The information below is about HL_8C3A_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19906.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8OEQ|1|1|G|2514
8OEQ|1|1|G|2515
8OEQ|1|1|U|2516
8OEQ|1|1|C|2517
8OEQ|1|1|A|2518
8OEQ|1|1|A|2519
8OEQ|1|1|A|2520
8OEQ|1|1|C|2521

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S1

Chain p

60S ribosomal protein L8