HL_8OEQ_080

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUUG

Length

5 nucleotides

Bulged bases

8OEQ|1|AS|U|132, 8OEQ|1|AS|U|134

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_080 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.1072

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

8OEQ|1|AS|C|131
8OEQ|1|AS|U|132
8OEQ|1|AS|U|133
8OEQ|1|AS|U|134
8OEQ|1|AS|G|135

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain 9

Ribosomal protein L24

Chain BI

60S ribosomal protein L15-A

Chain CC

Ribosomal protein L29