HL_8OEQ_088

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUUCUGC

Length

8 nucleotides

Bulged bases

8OEQ|1|AS|U|542, 8OEQ|1|AS|U|544, 8OEQ|1|AS|G|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_088 not in the Motif Atlas

Homologous match to HL_8C3A_012

Geometric discrepancy: 0.4991

The information below is about HL_8C3A_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

8OEQ|1|AS|G|539
8OEQ|1|AS|C|540
8OEQ|1|AS|U|541
8OEQ|1|AS|U|542
8OEQ|1|AS|C|543
8OEQ|1|AS|U|544
8OEQ|1|AS|G|545
8OEQ|1|AS|C|546

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BH

60S ribosomal protein L14-B

Chain BN

60S ribosomal protein L20