HL_8OEQ_097
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GCGAAAGAC
- Length
- 9 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|909, 8OEQ|1|AS|G|912
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_097 not in the Motif Atlas
- Homologous match to HL_8P9A_133
- Geometric discrepancy: 0.064
- The information below is about HL_8P9A_133
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_92598.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8OEQ|1|AS|G|906
8OEQ|1|AS|C|907
8OEQ|1|AS|G|908
8OEQ|1|AS|A|909
8OEQ|1|AS|A|910
8OEQ|1|AS|A|911
8OEQ|1|AS|G|912
8OEQ|1|AS|A|913
8OEQ|1|AS|C|914
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AW
- 60S ribosomal protein L2-B
- Chain BI
- 60S ribosomal protein L15-A
- Chain CE
- 60S ribosomal protein L37-B
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