HL_8OEQ_098

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8OEQ|1|AS|C|955, 8OEQ|1|AS|U|956, 8OEQ|1|AS|C|957, 8OEQ|1|AS|A|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_098 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0942

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8OEQ|1|AS|C|954
8OEQ|1|AS|C|955
8OEQ|1|AS|U|956
8OEQ|1|AS|C|957
8OEQ|1|AS|A|958
8OEQ|1|AS|G|959

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BV

60S ribosomal protein L28

Chain BW

60S ribosomal protein L29

Chain CJ

60S ribosomal protein L42-B