HL_8OEQ_099
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UGAAAUG
- Length
- 7 nucleotides
- Bulged bases
- 8OEQ|1|AS|A|1021, 8OEQ|1|AS|U|1024
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_099 not in the Motif Atlas
- Homologous match to HL_8P9A_232
- Geometric discrepancy: 0.5128
- The information below is about HL_8P9A_232
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.5
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 428
Unit IDs
8OEQ|1|AS|U|1019
8OEQ|1|AS|G|1020
8OEQ|1|AS|A|1021
8OEQ|1|AS|A|1022
8OEQ|1|AS|A|1023
8OEQ|1|AS|U|1024
8OEQ|1|AS|G|1025
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain BF
- 60S ribosomal protein L11-B
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
- Chain DC
- 40S ribosomal protein S15
Coloring options: