HL_8P9A_232

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAUG

Length

7 nucleotides

Bulged bases

8P9A|1|AR|U|1028

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8P9A|1|AR|C|1023
8P9A|1|AR|G|1024
8P9A|1|AR|A|1025
8P9A|1|AR|A|1026
8P9A|1|AR|A|1027
8P9A|1|AR|U|1028
8P9A|1|AR|G|1029

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CM

Large ribosomal subunit protein uL5B

Chain c5

40S ribosomal protein S15

Chain sM

Suppressor protein STM1