HL_8OEQ_103
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGUUUUGACG
- Length
- 11 nucleotides
- Bulged bases
- 8OEQ|1|AS|G|1345, 8OEQ|1|AS|U|1346, 8OEQ|1|AS|U|1348, 8OEQ|1|AS|U|1349, 8OEQ|1|AS|G|1350, 8OEQ|1|AS|C|1352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_103 not in the Motif Atlas
- Homologous match to HL_8C3A_029
- Geometric discrepancy: 0.2877
- The information below is about HL_8C3A_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13577.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8OEQ|1|AS|C|1343
8OEQ|1|AS|U|1344
8OEQ|1|AS|G|1345
8OEQ|1|AS|U|1346
8OEQ|1|AS|U|1347
8OEQ|1|AS|U|1348
8OEQ|1|AS|U|1349
8OEQ|1|AS|G|1350
8OEQ|1|AS|A|1351
8OEQ|1|AS|C|1352
8OEQ|1|AS|G|1353
Current chains
- Chain AS
- 25S ribosomal RNA
Nearby chains
- Chain AY
- 60S ribosomal protein L4-B
- Chain BA
- 60S ribosomal protein L6
- Chain BB
- 60S ribosomal protein L7-A
- Chain BL
- 60S ribosomal protein L18-A
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