HL_8OEQ_106

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGCAGUU

Length

7 nucleotides

Bulged bases

8OEQ|1|AS|G|1503, 8OEQ|1|AS|U|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_106 not in the Motif Atlas

Homologous match to HL_8C3A_032

Geometric discrepancy: 0.092

The information below is about HL_8C3A_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_40756.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8OEQ|1|AS|A|1502
8OEQ|1|AS|G|1503
8OEQ|1|AS|C|1504
8OEQ|1|AS|A|1505
8OEQ|1|AS|G|1506
8OEQ|1|AS|U|1507
8OEQ|1|AS|U|1508

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BK

Ribosomal protein L22

Chain BM

60S ribosomal protein L19-A