HL_8OEQ_140

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_140 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.0573

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8OEQ|1|AS|U|3040
8OEQ|1|AS|G|3041
8OEQ|1|AS|A|3042
8OEQ|1|AS|U|3043
8OEQ|1|AS|C|3044
8OEQ|1|AS|A|3045

Current chains

Chain AS

25S ribosomal RNA

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain BP

60S ribosomal protein L22-B

Chain BY

60S ribosomal protein L31-B