HL_8OEQ_181

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_181 not in the Motif Atlas

Homologous match to HL_8C3A_222

Geometric discrepancy: 0.0752

The information below is about HL_8C3A_222

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

8

Unit IDs

8OEQ|1|B|U|1382
8OEQ|1|B|U|1383
8OEQ|1|B|U|1384
8OEQ|1|B|C|1385
8OEQ|1|B|A|1386
8OEQ|1|B|A|1387
8OEQ|1|B|G|1388

Current chains

Chain B

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S17-B

Chain e

40S ribosomal protein S28-B