HL_8OEQ_183
3D structure
- PDB id
- 8OEQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUGUAAUUGUU
- Length
- 12 nucleotides
- Bulged bases
- 8OEQ|1|B|U|1544, 8OEQ|1|B|U|1545, 8OEQ|1|B|G|1546
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OEQ_183 not in the Motif Atlas
- Homologous match to HL_8C3A_224
- Geometric discrepancy: 0.0684
- The information below is about HL_8C3A_224
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_03273.2
- Basepair signature
- cWW-F-F-tWH-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8OEQ|1|B|A|1537
8OEQ|1|B|U|1538
8OEQ|1|B|U|1539
8OEQ|1|B|G|1540
8OEQ|1|B|U|1541
8OEQ|1|B|A|1542
8OEQ|1|B|A|1543
8OEQ|1|B|U|1544
8OEQ|1|B|U|1545
8OEQ|1|B|G|1546
8OEQ|1|B|U|1547
8OEQ|1|B|U|1548
Current chains
- Chain B
- 18S ribosomal RNA
Nearby chains
- Chain R
- 40S ribosomal protein S15
- Chain U
- 40S ribosomal protein S18-B
- Chain V
- 40S ribosomal protein S19-A
- Chain f
- 40S ribosomal protein S29A
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