HL_8OEQ_190

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8OEQ|1|CM|U|230, 8OEQ|1|CM|C|231

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_190 not in the Motif Atlas

Homologous match to HL_8C3A_196

Geometric discrepancy: 0.0683

The information below is about HL_8C3A_196

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

8OEQ|1|CM|C|228
8OEQ|1|CM|U|229
8OEQ|1|CM|U|230
8OEQ|1|CM|C|231
8OEQ|1|CM|G|232
8OEQ|1|CM|G|233

Current chains

Chain CM

18S ribosomal RNA

Nearby chains