HL_8OEQ_193

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8OEQ|1|CM|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_193 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0308

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8OEQ|1|CM|G|328
8OEQ|1|CM|A|329
8OEQ|1|CM|U|330
8OEQ|1|CM|A|331
8OEQ|1|CM|G|332
8OEQ|1|CM|U|333
8OEQ|1|CM|G|334
8OEQ|1|CM|G|335
8OEQ|1|CM|C|336

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CV

40S ribosomal protein S8

Chain CY

40S ribosomal protein S11A