HL_8OEQ_207

3D structure

PDB id

8OEQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCUUUUAUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OEQ_207 not in the Motif Atlas

Homologous match to HL_8C3A_236

Geometric discrepancy: 0.0584

The information below is about HL_8C3A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53099.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8OEQ|1|CM|U|1040
8OEQ|1|CM|C|1041
8OEQ|1|CM|U|1042
8OEQ|1|CM|U|1043
8OEQ|1|CM|U|1044
8OEQ|1|CM|U|1045
8OEQ|1|CM|A|1046
8OEQ|1|CM|U|1047
8OEQ|1|CM|U|1048
8OEQ|1|CM|G|1049

Current chains

Chain CM

18S ribosomal RNA

Nearby chains

Chain CO

40S ribosomal protein S1

Chain DO

40S ribosomal protein S27