HL_8OH6_017

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CAUUAG

Length

6 nucleotides

Bulged bases

8OH6|1|1|U|731

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_017 not in the Motif Atlas

Homologous match to HL_8C3A_017

Geometric discrepancy: 0.0629

The information below is about HL_8C3A_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_54152.1

Basepair signature

cWW-F-F

Number of instances in this motif group

5

Unit IDs

8OH6|1|1|C|729
8OH6|1|1|A|730
8OH6|1|1|U|731
8OH6|1|1|U|732
8OH6|1|1|A|733
8OH6|1|1|G|734

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain y

60S ribosomal protein L18-A