HL_8OH6_039

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AAUUUU

Length

6 nucleotides

Bulged bases

8OH6|1|1|U|1758, 8OH6|1|1|U|1759, 8OH6|1|1|U|1760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_039 not in the Motif Atlas

Homologous match to HL_8C3A_039

Geometric discrepancy: 0.223

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OH6|1|1|A|1756
8OH6|1|1|A|1757
8OH6|1|1|U|1758
8OH6|1|1|U|1759
8OH6|1|1|U|1760
8OH6|1|1|U|1761

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain 8

60S ribosomal protein L25

Chain z

60S ribosomal protein L19-A