HL_8OH6_043

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8OH6|1|1|U|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_043 not in the Motif Atlas

Homologous match to HL_8C3A_043

Geometric discrepancy: 0.0475

The information below is about HL_8C3A_043

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8OH6|1|1|C|1919
8OH6|1|1|U|1920
8OH6|1|1|U|1921
8OH6|1|1|C|1922
8OH6|1|1|G|1923
8OH6|1|1|G|1924

Current chains

Chain 1

25S (gene name XR_002086444.1)

Nearby chains

Chain AO

60S ribosomal protein L41

Chain AQ

60S ribosomal protein L43-A

Chain B

Small subunit ribosomal RNA; SSU rRNA