HL_8OH6_060
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 8OH6|1|1|G|2749
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_060 not in the Motif Atlas
- Homologous match to HL_8C3A_061
- Geometric discrepancy: 0.0488
- The information below is about HL_8C3A_061
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8OH6|1|1|C|2748
8OH6|1|1|G|2749
8OH6|1|1|G|2750
8OH6|1|1|A|2751
8OH6|1|1|A|2752
8OH6|1|1|U|2753
8OH6|1|1|U|2754
8OH6|1|1|U|2755
8OH6|1|1|G|2756
Current chains
- Chain 1
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AJ
- 60S ribosomal protein L36
- Chain AP
- 60S ribosomal protein L42-B
- Chain t
- 60S ribosomal protein L13
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