HL_8OH6_082

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8OH6|1|AS|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_082 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.0799

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

8OH6|1|AS|U|193
8OH6|1|AS|U|194
8OH6|1|AS|G|195
8OH6|1|AS|G|196
8OH6|1|AS|A|197
8OH6|1|AS|A|198
8OH6|1|AS|C|199
8OH6|1|AS|A|200

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24

Chain BZ

60S ribosomal protein L32