HL_8OH6_083

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CACAG

Length

5 nucleotides

Bulged bases

8OH6|1|AS|C|209, 8OH6|1|AS|A|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_083 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.0663

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8OH6|1|AS|C|207
8OH6|1|AS|A|208
8OH6|1|AS|C|209
8OH6|1|AS|A|210
8OH6|1|AS|G|211

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24