HL_8OH6_084

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8OH6|1|AS|G|217, 8OH6|1|AS|A|218, 8OH6|1|AS|G|219

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_084 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0698

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

8OH6|1|AS|G|215
8OH6|1|AS|U|216
8OH6|1|AS|G|217
8OH6|1|AS|A|218
8OH6|1|AS|G|219
8OH6|1|AS|A|220
8OH6|1|AS|A|221
8OH6|1|AS|U|222
8OH6|1|AS|C|223

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AU

5.8S ribosomal RNA; 5.8S rRNA

Chain AY

60S ribosomal protein L4-B

Chain BT

Ribosomal protein L24