HL_8OH6_096
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGAAAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_096 not in the Motif Atlas
- Homologous match to HL_8C3A_019
- Geometric discrepancy: 0.0821
- The information below is about HL_8C3A_019
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8OH6|1|AS|G|840
8OH6|1|AS|G|841
8OH6|1|AS|A|842
8OH6|1|AS|A|843
8OH6|1|AS|A|844
8OH6|1|AS|C|845
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain CK
- 60S ribosomal protein L43-A
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
- Chain CY
- 40S ribosomal protein S11A
- Chain DA
- 40S ribosomal protein S13
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