HL_8OH6_100
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- UGAAAUG
- Length
- 7 nucleotides
- Bulged bases
- 8OH6|1|AS|A|1021, 8OH6|1|AS|U|1024
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_100 not in the Motif Atlas
- Homologous match to HL_8P9A_232
- Geometric discrepancy: 0.4883
- The information below is about HL_8P9A_232
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.1
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 335
Unit IDs
8OH6|1|AS|U|1019
8OH6|1|AS|G|1020
8OH6|1|AS|A|1021
8OH6|1|AS|A|1022
8OH6|1|AS|A|1023
8OH6|1|AS|U|1024
8OH6|1|AS|G|1025
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BF
- 60S ribosomal protein L11-B
- Chain CL
- 60S ribosomal protein CAALFM_C304810CA
- Chain CM
- Small subunit ribosomal RNA; SSU rRNA
- Chain DC
- 40S ribosomal protein S15
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