HL_8OH6_101

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8OH6|1|AS|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_101 not in the Motif Atlas

Homologous match to HL_8C3A_024

Geometric discrepancy: 0.0785

The information below is about HL_8C3A_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8OH6|1|AS|C|1072
8OH6|1|AS|U|1073
8OH6|1|AS|U|1074
8OH6|1|AS|A|1075
8OH6|1|AS|A|1076
8OH6|1|AS|U|1077
8OH6|1|AS|U|1078
8OH6|1|AS|G|1079

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain AZ

Uncharacterized protein CaJ7.0206

Chain BO

60S ribosomal protein L21-A

Chain BW

60S ribosomal protein L29