HL_8OH6_111
3D structure
- PDB id
- 8OH6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GUUAUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 8OH6|1|AS|U|1683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OH6_111 not in the Motif Atlas
- Homologous match to HL_8P9A_148
- Geometric discrepancy: 0.1086
- The information below is about HL_8P9A_148
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_68642.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8OH6|1|AS|G|1676
8OH6|1|AS|U|1677
8OH6|1|AS|U|1678
8OH6|1|AS|A|1679
8OH6|1|AS|U|1680
8OH6|1|AS|C|1681
8OH6|1|AS|U|1682
8OH6|1|AS|U|1683
8OH6|1|AS|U|1684
Current chains
- Chain AS
- 25S (gene name XR_002086444.1)
Nearby chains
- Chain BM
- 60S ribosomal protein L19-A
- Chain BP
- 60S ribosomal protein L22-B
Coloring options: