Motif HL_22758.1 Version HL_22758.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9E6Q_036 | 9E6Q | 0.5219 | 0 | 1 | LSU rRNA | A | 1600 | C | 1601 | U | 1602 | G | 1603 | C | 1604 | C | 1605 | G | 1606 | U | 1607 | cWW | ntWW | ||
| 2 | HL_9AXU_034 | 9AXU | 0.1383 | 1 | 2 | LSU rRNA | G | 1715 | U | 1716 | U | 1717 | C | 1718 | U | 1719 | C | 1720 | U | 1721 | U | 1723 | cWW | |||
| 3 | HL_8P9A_148 | 8P9A | 0.0000 | 1 | Pseudoknot geometry | AR | LSU rRNA | G | 1680 | U | 1681 | U | 1682 | A | 1683 | U | 1684 | C | 1685 | U | 1686 | U | 1688 | cWW | ||
| 4 | HL_8OI5_033 | 8OI5 | 0.1094 | 1 | 1 | LSU rRNA | G | 1676 | U | 1677 | U | 1678 | A | 1679 | U | 1680 | C | 1681 | U | 1682 | U | 1684 | cWW | ncwW | ||
| 5 | HL_8GLP_121 | 8GLP | 0.2915 | 1 | L5 | LSU rRNA | G | 2624 | U | 2625 | U | 2626 | C | 2627 | U | 2628 | C | 2629 | U | 2630 | PSU | 2632 | cWW | ncwW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUAUCUUU | 2 |
| ACUGCCGU | 1 |
| GUUCUCUUU | 1 |
| GUUCUCUU(PSU) | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUCUCUU | 2 |
| UUAUCUU | 2 |
| CUGCCG | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Pseudoknot geometry (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.29 | Max 0.71
Coloring options: