HL_8OH6_112

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_112 not in the Motif Atlas

Homologous match to HL_8P9A_149

Geometric discrepancy: 0.0975

The information below is about HL_8P9A_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97067.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8OH6|1|AS|G|1715
8OH6|1|AS|U|1716
8OH6|1|AS|U|1717
8OH6|1|AS|U|1718
8OH6|1|AS|A|1719
8OH6|1|AS|U|1720
8OH6|1|AS|C|1721

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain CK

60S ribosomal protein L43-A