HL_8OH6_118

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8OH6|1|AS|G|2089

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_118 not in the Motif Atlas

Homologous match to HL_8C3A_045

Geometric discrepancy: 0.1091

The information below is about HL_8C3A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8OH6|1|AS|G|2088
8OH6|1|AS|G|2089
8OH6|1|AS|U|2090
8OH6|1|AS|A|2091
8OH6|1|AS|C|2092

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain BR

60S ribosomal protein L24-A

Chain CM

Small subunit ribosomal RNA; SSU rRNA