HL_8OH6_138

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UGAUCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_138 not in the Motif Atlas

Homologous match to HL_8C3A_067

Geometric discrepancy: 0.0634

The information below is about HL_8C3A_067

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8OH6|1|AS|U|3040
8OH6|1|AS|G|3041
8OH6|1|AS|A|3042
8OH6|1|AS|U|3043
8OH6|1|AS|C|3044
8OH6|1|AS|A|3045

Current chains

Chain AS

25S (gene name XR_002086444.1)

Nearby chains

Chain BM

60S ribosomal protein L19-A

Chain BP

60S ribosomal protein L22-B

Chain BY

60S ribosomal protein L31-B