HL_8OH6_150

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8OH6|1|AU|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_150 not in the Motif Atlas

Homologous match to HL_8C3A_077

Geometric discrepancy: 0.0957

The information below is about HL_8C3A_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8OH6|1|AU|G|124
8OH6|1|AU|U|125
8OH6|1|AU|A|126
8OH6|1|AU|U|127
8OH6|1|AU|U|128
8OH6|1|AU|C|129

Current chains

Chain AU

5.8S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain BS

60S ribosomal protein L25