HL_8OH6_158

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8OH6|1|B|G|335

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_158 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0546

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8OH6|1|B|G|328
8OH6|1|B|A|329
8OH6|1|B|U|330
8OH6|1|B|A|331
8OH6|1|B|G|332
8OH6|1|B|U|333
8OH6|1|B|G|334
8OH6|1|B|G|335
8OH6|1|B|C|336

Current chains

Chain B

18S

Nearby chains

Chain K

40S ribosomal protein S8

Chain N

40S ribosomal protein S11A