HL_8OH6_201

3D structure

PDB id

8OH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OH6_201 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3528

The information below is about HL_4LX6_002

Detailed Annotation

Purine riboswitch

Broad Annotation

Purine riboswitch

Motif group

HL_78364.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

8OH6|1|CM|A|814
8OH6|1|CM|U|815
8OH6|1|CM|U|816
8OH6|1|CM|U|817
8OH6|1|CM|U|818
8OH6|1|CM|G|819
8OH6|1|CM|U|820
8OH6|1|CM|U|821
8OH6|1|CM|G|822
8OH6|1|CM|G|823
8OH6|1|CM|U|824
8OH6|1|CM|U|825
8OH6|1|CM|U|826
8OH6|1|CM|C|827
8OH6|1|CM|U|828

Current chains

Chain CM

18S

Nearby chains

Chain CY

40S ribosomal protein S11A