HL_8OI5_005

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8OI5|1|1|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_005 not in the Motif Atlas

Homologous match to HL_8C3A_005

Geometric discrepancy: 0.0458

The information below is about HL_8C3A_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8OI5|1|1|U|193
8OI5|1|1|U|194
8OI5|1|1|G|195
8OI5|1|1|G|196
8OI5|1|1|A|197
8OI5|1|1|A|198
8OI5|1|1|C|199
8OI5|1|1|A|200

Current chains

Chain 1

25S

Nearby chains

Chain 9

Ribosomal protein L24

Chain AF

60S ribosomal protein L32