8OI5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8OI5_001 | 1/1/37:44 | No text annotation | homologous HL_8C3A_001 NA | |
| HL_8OI5_002 | 1/1/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8OI5_003 | 1/1/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8OI5_004 | 1/1/131:135 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8OI5_005 | 1/1/193:200 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8OI5_006 | 1/1/207:211 | No text annotation | geometric HL_8C3A_006 NA | |
| HL_8OI5_007 | 1/1/215:223 | T-loop with unstacked turn | homologous HL_8C3A_007 NA | |
| HL_8OI5_008 | 1/1/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8OI5_009 | 1/1/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8OI5_010 | 1/1/357:362 | GNRA | homologous HL_8P9A_122 HL_37824.7 | |
| HL_8OI5_011 | 1/1/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8OI5_012 | 1/1/539:546 | No text annotation | homologous HL_8C3A_012 NA | |
| HL_8OI5_013 | 1/1/638:647 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8OI5_014 | 1/1/684:692 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8OI5_015 | 1/1/705:710 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8OI5_016 | 1/1/729:734 | No text annotation | homologous HL_8C3A_017 NA | |
| HL_8OI5_017 | 1/1/759:764 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8OI5_018 | 1/1/840:845 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8OI5_019 | 1/1/872:881 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8OI5_020 | 1/1/906:914 | No text annotation | homologous HL_8P9A_133 HL_87553.1 | |
| HL_8OI5_021 | 1/1/954:959 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8OI5_023 | 1/1/1072:1079 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_8OI5_024 | 1/1/1122:1128 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8OI5_025 | 1/1/1144:1151 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8OI5_026 | 1/1/1399:1404 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8OI5_027 | 1/1/1458:1466 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8OI5_028 | 1/1/1502:1508 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8OI5_029 | 1/1/1540:1545 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8OI5_030 | 1/1/1562:1569 | No text annotation | homologous HL_8C3A_034 NA | |
| HL_8OI5_031 | 1/1/1595:1604 | No text annotation | homologous HL_8C3A_035 NA | |
| HL_8OI5_032 | 1/1/1630:1635 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8OI5_033 | 1/1/1676:1684 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8OI5_034 | 1/1/1715:1721 | No text annotation | homologous HL_8C3A_038 NA | |
| HL_8OI5_036 | 1/1/1788:1792 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8OI5_037 | 1/1/1840:1847 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8OI5_038 | 1/1/1858:1864 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8OI5_039 | 1/1/1919:1924 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8OI5_040 | 1/1/2088:2092 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8OI5_041 | 1/1/2113:2123 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8OI5_042 | 1/1/2142:2148 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8OI5_043 | 1/1/2198:2203 | GNRA | homologous HL_8C3A_048 NA | |
| HL_8OI5_044 | 1/1/2231:2241 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8OI5_045 | 1/1/2270:2278 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8OI5_046 | 1/1/2347:2356 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8OI5_047 | 1/1/2422:2481 | No text annotation | ||
| HL_8OI5_050 | 1/1/2588:2596 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8OI5_051 | 1/1/2605:2617 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_8OI5_052 | 1/1/2645:2653 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8OI5_053 | 1/1/2665:2672 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8OI5_054 | 1/1/2696:2704 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8OI5_055 | 1/1/2716:2721 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8OI5_056 | 1/1/2748:2756 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8OI5_057 | 1/1/2812:2820 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8OI5_058 | 1/1/2869:2876 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8OI5_059 | 1/1/2892:2898 | No text annotation | homologous HL_8C3A_064 NA | |
| HL_8OI5_060 | 1/1/2935:2940 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8OI5_061 | 1/1/2997:3002 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8OI5_062 | 1/1/3040:3045 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8OI5_063 | 1/1/3082:3096 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8OI5_064 | 1/1/3160:3167 | No text annotation | homologous HL_8C3A_069 NA | |
| HL_8OI5_065 | 1/1/3205:3212 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8OI5_066 | 1/1/3268:3276 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8OI5_067 | 1/1/3315:3318 | Mini UNCG | homologous HL_8C3A_072 NA | |
| HL_8OI5_068 | 1/3/32:45 | No text annotation HL_13971.1 | ||
| HL_8OI5_069 | 1/3/36:41 | No text annotation HL_47787.2 | ||
| HL_8OI5_070 | 1/3/88:93 | GNRA HL_37824.7 | ||
| HL_8OI5_071 | 1/4/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_8OI5_072 | 1/4/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_8OI5_073 | 1/4/108:114 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8OI5_074 | 1/4/124:129 | No text annotation | homologous HL_8C3A_077 NA | |
| HL_8OI5_075 | 1/AS/37:44 | No text annotation | homologous HL_8P9A_113 HL_30068.2 | |
| HL_8OI5_077 | 1/AS/89:95 | No text annotation | homologous HL_8C3A_003 NA | |
| HL_8OI5_078 | 1/AS/131:135 | No text annotation | homologous HL_8C3A_004 NA | |
| HL_8OI5_079 | 1/AS/193:200 | No text annotation | homologous HL_8P9A_117 HL_01609.3 | |
| HL_8OI5_080 | 1/AS/207:211 | No text annotation | geometric HL_8VTW_010 NA | |
| HL_8OI5_082 | 1/AS/278:287 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8OI5_083 | 1/AS/303:312 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8OI5_084 | 1/AS/357:362 | GNRA | homologous HL_8P9A_122 HL_37824.7 | |
| HL_8OI5_085 | 1/AS/382:387 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8OI5_086 | 1/AS/597:602 | No text annotation | homologous HL_8C3A_013 NA | |
| HL_8OI5_087 | 1/AS/638:647 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8OI5_088 | 1/AS/684:692 | No text annotation | homologous HL_8C3A_015 NA | |
| HL_8OI5_089 | 1/AS/705:710 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8OI5_090 | 1/AS/729:734 | No text annotation | homologous HL_8C3A_017 NA | |
| HL_8OI5_091 | 1/AS/759:764 | No text annotation | homologous HL_8C3A_018 NA | |
| HL_8OI5_092 | 1/AS/840:845 | GNRA | homologous HL_8C3A_019 NA | |
| HL_8OI5_093 | 1/AS/872:881 | No text annotation | homologous HL_8C3A_020 NA | |
| HL_8OI5_095 | 1/AS/954:959 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8OI5_096 | 1/AS/1072:1079 | No text annotation | homologous HL_8C3A_024 NA | |
| HL_8OI5_097 | 1/AS/1122:1128 | GNRA | homologous HL_8C3A_025 NA | |
| HL_8OI5_098 | 1/AS/1144:1151 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8OI5_099 | 1/AS/1343:1353 | No text annotation | homologous HL_8C3A_029 NA | |
| HL_8OI5_100 | 1/AS/1399:1404 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8OI5_101 | 1/AS/1458:1466 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8OI5_102 | 1/AS/1502:1508 | Pseudoknot geometry with 3' bulge | homologous HL_8C3A_032 NA | |
| HL_8OI5_103 | 1/AS/1540:1545 | GNRA variation | homologous HL_8C3A_033 NA | |
| HL_8OI5_104 | 1/AS/1562:1569 | No text annotation | ||
| HL_8OI5_106 | 1/AS/1630:1635 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8OI5_107 | 1/AS/1676:1684 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8OI5_108 | 1/AS/1715:1721 | No text annotation | homologous HL_8P9A_149 HL_25967.2 | |
| HL_8OI5_110 | 1/AS/1788:1792 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8OI5_111 | 1/AS/1840:1847 | No text annotation | homologous HL_8C3A_041 NA | |
| HL_8OI5_112 | 1/AS/1858:1864 | GNRA | homologous HL_8C3A_042 NA | |
| HL_8OI5_113 | 1/AS/1919:1924 | UNCG | homologous HL_8C3A_043 NA | |
| HL_8OI5_114 | 1/AS/2088:2092 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8OI5_115 | 1/AS/2113:2123 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8OI5_116 | 1/AS/2142:2148 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8OI5_117 | 1/AS/2198:2203 | GNRA | homologous HL_8P9A_159 HL_37824.7 | |
| HL_8OI5_118 | 1/AS/2231:2241 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8OI5_119 | 1/AS/2270:2278 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8OI5_120 | 1/AS/2347:2356 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8OI5_121 | 1/AS/2514:2521 | No text annotation | homologous HL_8C3A_053 NA | |
| HL_8OI5_123 | 1/AS/2588:2596 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8OI5_124 | 1/AS/2605:2617 | No text annotation | homologous HL_8C3A_056 NA | |
| HL_8OI5_125 | 1/AS/2645:2653 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8OI5_126 | 1/AS/2665:2672 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8OI5_127 | 1/AS/2696:2704 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8OI5_128 | 1/AS/2716:2721 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8OI5_129 | 1/AS/2748:2756 | Pseudoknot geometry | homologous HL_8C3A_061 NA | |
| HL_8OI5_130 | 1/AS/2812:2820 | No text annotation | homologous HL_8C3A_062 NA | |
| HL_8OI5_131 | 1/AS/2869:2876 | No text annotation | homologous HL_8C3A_063 NA | |
| HL_8OI5_132 | 1/AS/2892:2898 | No text annotation | homologous HL_8P9A_174 HL_30068.2 | |
| HL_8OI5_133 | 1/AS/2935:2940 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8OI5_134 | 1/AS/2997:3002 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8OI5_135 | 1/AS/3040:3045 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8OI5_136 | 1/AS/3082:3096 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8OI5_138 | 1/AS/3205:3212 | No text annotation | homologous HL_8C3A_070 NA | |
| HL_8OI5_139 | 1/AS/3268:3276 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8OI5_140 | 1/AS/3315:3318 | Mini UNCG | homologous HL_8P9A_182 HL_48778.2 | |
| HL_8OI5_141 | 1/AT/32:45 | No text annotation | geometric HL_8C3A_228 NA | |
| HL_8OI5_142 | 1/AT/36:41 | No text annotation | homologous HL_8C3A_073 NA | |
| HL_8OI5_143 | 1/AT/88:93 | GNRA | homologous HL_8P9A_185 HL_37824.7 | |
| HL_8OI5_144 | 1/AU/47:56 | Pseudoknot with intercalation | homologous HL_8C3A_229 NA | |
| HL_8OI5_145 | 1/AU/69:89 | No text annotation | homologous HL_8C3A_230 NA | |
| HL_8OI5_146 | 1/AU/108:114 | No text annotation | homologous HL_8C3A_076 NA | |
| HL_8OI5_148 | 1/B/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8OI5_149 | 1/B/70:81 | No text annotation | homologous HL_8C3A_193 NA | |
| HL_8OI5_150 | 1/B/152:158 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_8OI5_151 | 1/B/188:193 | No text annotation | homologous HL_8C3A_195 NA | |
| HL_8OI5_153 | 1/B/241:248 | T-loop with 1 bulged base | homologous HL_8C3A_197 NA | |
| HL_8OI5_155 | 1/B/328:336 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8OI5_156 | 1/B/366:371 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_8OI5_157 | 1/B/391:402 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8OI5_158 | 1/B/412:417 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8OI5_159 | 1/B/448:454 | No text annotation | homologous HL_8C3A_203 NA | |
| HL_8OI5_161 | 1/B/518:530 | No text annotation | homologous HL_8C3A_205 NA | |
| HL_8OI5_162 | 1/B/567:572 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8OI5_163 | 1/B/749:757 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8OI5_164 | 1/B/762:767 | No text annotation | homologous HL_8C3A_209 NA | |
| HL_8OI5_165 | 1/B/813:829 | No text annotation | homologous HL_8C3A_210 NA | |
| HL_8OI5_166 | 1/B/885:894 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8OI5_167 | 1/B/922:927 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8OI5_168 | 1/B/982:992 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8OI5_169 | 1/B/1040:1049 | No text annotation | homologous HL_8C3A_236 NA | |
| HL_8OI5_170 | 1/B/1069:1074 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8OI5_171 | 1/B/1106:1111 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8OI5_172 | 1/B/1173:1182 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8OI5_173 | 1/B/1223:1232 | Anticodon loop related | homologous HL_8C3A_218 NA | |
| HL_8OI5_174 | 1/B/1281:1286 | GNRA | homologous HL_8C3A_219 NA | |
| HL_8OI5_175 | 1/B/1294:1301 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8OI5_176 | 1/B/1344:1349 | No text annotation | homologous HL_8C3A_221 NA | |
| HL_8OI5_178 | 1/B/1488:1493 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8OI5_179 | 1/B/1537:1548 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8OI5_180 | 1/B/1581:1589 | No text annotation | homologous HL_8C3A_225 NA | |
| HL_8OI5_182 | 1/CM/7:17 | No text annotation | homologous HL_8C3A_192 NA | |
| HL_8OI5_183 | 1/CM/70:81 | No text annotation | homologous HL_8C3A_193 NA | |
| HL_8OI5_184 | 1/CM/152:158 | GNRA related | homologous HL_8C3A_194 NA | |
| HL_8OI5_187 | 1/CM/241:248 | T-loop with 1 bulged base | homologous HL_8P9A_195 HL_77436.5 | |
| HL_8OI5_189 | 1/CM/328:336 | GNRA related | homologous HL_8C3A_199 NA | |
| HL_8OI5_190 | 1/CM/366:371 | GNRA variation | homologous HL_8C3A_200 NA | |
| HL_8OI5_191 | 1/CM/391:402 | No text annotation | homologous HL_8C3A_201 NA | |
| HL_8OI5_192 | 1/CM/412:417 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8OI5_193 | 1/CM/448:454 | No text annotation | homologous HL_8C3A_203 NA | |
| HL_8OI5_195 | 1/CM/518:530 | No text annotation | homologous HL_8C3A_205 NA | |
| HL_8OI5_196 | 1/CM/567:572 | GNRA variation | homologous HL_8C3A_206 NA | |
| HL_8OI5_198 | 1/CM/749:757 | No text annotation | homologous HL_8C3A_208 NA | |
| HL_8OI5_199 | 1/CM/762:767 | No text annotation | homologous HL_8C3A_209 NA | |
| HL_8OI5_201 | 1/CM/885:894 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8OI5_202 | 1/CM/922:927 | GNRA | homologous HL_8C3A_212 NA | |
| HL_8OI5_203 | 1/CM/982:992 | No text annotation | homologous HL_8C3A_213 NA | |
| HL_8OI5_204 | 1/CM/1040:1049 | No text annotation | homologous HL_8C3A_236 NA | |
| HL_8OI5_205 | 1/CM/1069:1074 | GNRA | homologous HL_8C3A_215 NA | |
| HL_8OI5_206 | 1/CM/1106:1111 | GNRA | homologous HL_8C3A_216 NA | |
| HL_8OI5_208 | 1/CM/1223:1232 | Anticodon loop related | homologous HL_8C3A_218 NA | |
| HL_8OI5_209 | 1/CM/1281:1286 | GNRA | homologous HL_8C3A_219 NA | |
| HL_8OI5_210 | 1/CM/1294:1301 | T-loop related | homologous HL_8C3A_220 NA | |
| HL_8OI5_212 | 1/CM/1382:1388 | No text annotation | homologous HL_8C3A_222 NA | |
| HL_8OI5_213 | 1/CM/1488:1493 | GNRA | homologous HL_8C3A_223 NA | |
| HL_8OI5_214 | 1/CM/1537:1548 | No text annotation | homologous HL_8C3A_224 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8OI5_022 | Anticodon loop related | ||
| HL_8OI5_035 | No text annotation | ||
| HL_8OI5_048 | No text annotation | ||
| HL_8OI5_049 | No text annotation | ||
| HL_8OI5_076 | No text annotation | ||
| HL_8OI5_081 | T-loop with unstacked turn | ||
| HL_8OI5_094 | No text annotation | ||
| HL_8OI5_105 | No text annotation | ||
| HL_8OI5_109 | No text annotation | ||
| HL_8OI5_122 | No text annotation | ||
| HL_8OI5_137 | No text annotation | ||
| HL_8OI5_147 | No text annotation | ||
| HL_8OI5_152 | No text annotation | ||
| HL_8OI5_154 | Mini UNCG | ||
| HL_8OI5_160 | No text annotation | ||
| HL_8OI5_177 | No text annotation | ||
| HL_8OI5_181 | GNRA variation | ||
| HL_8OI5_185 | No text annotation | ||
| HL_8OI5_186 | No text annotation | ||
| HL_8OI5_188 | Mini UNCG | ||
| HL_8OI5_194 | No text annotation | ||
| HL_8OI5_197 | No text annotation | ||
| HL_8OI5_200 | No text annotation | ||
| HL_8OI5_207 | No text annotation | ||
| HL_8OI5_211 | No text annotation | ||
| HL_8OI5_215 | No text annotation | ||
| HL_8OI5_216 | No text annotation | ||
| HL_8OI5_218 | No text annotation | ||
| HL_8OI5_217 | GNRA variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8OI5_002 | 1/1/6:7, 1/4/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8OI5_003 | 1/1/12:14, 1/4/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8OI5_004 | 1/1/26:27, 1/1/55:57 | Single stack bend | homologous IL_8P9A_233 IL_90729.1 | |
| IL_8OI5_005 | 1/1/30:37, 1/1/44:52 | No text annotation | homologous IL_8P9A_234 IL_84694.2 | |
| IL_8OI5_006 | 1/1/81:88, 1/1/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8OI5_007 | 1/1/122:123, 1/1/143:148 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8OI5_008 | 1/1/124:126, 1/1/140:142 | Isolated non-canonical cWW pair | homologous IL_8C3A_008 NA | |
| IL_8OI5_009 | 1/1/161:165, 1/1/256:259 | No text annotation | homologous IL_8C3A_009 NA | |
| IL_8OI5_010 | 1/1/168:169, 1/1/248:253 | No text annotation | homologous IL_8C3A_010 NA | |
| IL_8OI5_011 | 1/1/176:177, 1/1/238:241 | No text annotation | homologous IL_8C3A_011 NA | |
| IL_8OI5_012 | 1/1/177:178, 1/1/236:238 | Single stack bend | homologous IL_8C3A_012 NA | |
| IL_8OI5_013 | 1/1/188:190, 1/1/203:204 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8OI5_014 | 1/1/337:339, 1/4/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8OI5_015 | 1/1/376:379, 1/1/390:403 | No text annotation | geometric IL_8C3A_015 NA | |
| IL_8OI5_016 | 1/1/404:410, 1/4/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8OI5_017 | 1/1/439:442, 1/1/487:488 | Minor groove platform | homologous IL_8C3A_017 NA | |
| IL_8OI5_018 | 1/1/445:448, 1/1/481:484 | Tandem non-canonical cWW pairs | homologous IL_8C3A_018 NA | |
| IL_8OI5_019 | 1/1/505:507, 1/1/578:579 | Single bulged A | homologous IL_8C3A_019 NA | |
| IL_8OI5_020 | 1/1/508:509, 1/1/575:577 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_8OI5_021 | 1/1/513:522, 1/1/564:571 | No text annotation | homologous IL_8C3A_021 NA | |
| IL_8OI5_022 | 1/1/527:534, 1/1/551:559 | No text annotation | homologous IL_8C3A_022 NA | |
| IL_8OI5_023 | 1/1/666:668, 1/1/788:790 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8OI5_024 | 1/1/678:682, 1/1/694:698 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_8OI5_025 | 1/1/723:726, 1/1/737:741 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8OI5_026 | 1/1/748:749, 1/1/775:777 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8OI5_027 | 1/1/751:752, 1/1/771:773 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8OI5_028 | 1/1/754:759, 1/1/764:769 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8OI5_029 | 1/1/799:801, 1/1/934:936 | Isolated non-canonical cWW pair | homologous IL_8P9A_255 IL_87907.2 | |
| IL_8OI5_030 | 1/1/801:805, 1/1/927:934 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8OI5_031 | 1/1/824:825, 1/1/891:893 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8OI5_032 | 1/1/829:830, 1/1/855:857 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8OI5_033 | 1/1/830:834, 1/1/851:855 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8OI5_034 | 1/1/865:868, 1/1/884:886 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8OI5_035 | 1/1/869:871, 1/1/882:883 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8OI5_036 | 1/1/903:905, 1/1/915:919 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8OI5_037 | 1/1/950:952, 1/1/961:963 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_28037.2 | |
| IL_8OI5_038 | 1/1/965:966, 1/1/1107:1109 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8OI5_039 | 1/1/973:978, 1/1/1097:1100 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_8OI5_040 | 1/1/979:981, 1/1/1095:1096 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8OI5_041 | 1/1/987:993, 1/1/1048:1054 | No text annotation | homologous IL_8P9A_266 IL_29198.2 | |
| IL_8OI5_042 | 1/1/993:994, 1/1/1046:1048 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8OI5_043 | 1/1/995:1000, 1/1/1042:1045 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8OI5_044 | 1/1/1002:1005, 1/1/1037:1040 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8OI5_045 | 1/1/1005:1007, 1/1/1035:1037 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_8OI5_046 | 1/1/1010:1014, 1/1/1030:1032 | No text annotation | homologous IL_8C3A_508 NA | |
| IL_8OI5_047 | 1/1/1065:1067, 1/1/1083:1085 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8OI5_048 | 1/1/1070:1072, 1/1/1079:1080 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8OI5_049 | 1/1/1116:1118, 1/1/1132:1134 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8OI5_051 | 1/1/1163:1167, 1/1/1324:1328 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8OI5_052 | 1/1/1169:1176, 1/1/1321:1322 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8OI5_053 | 1/1/1176:1178, 1/1/1320:1321 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_8OI5_054 | 1/1/1183:1190, 1/1/1310:1315 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8OI5_055 | 1/1/1190:1201, 1/1/1295:1310 | No text annotation | homologous IL_8C3A_055 NA | |
| IL_8OI5_056 | 1/1/1203:1205, 1/1/1292:1293 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8OI5_057 | 1/1/1339:1342, 1/1/1354:1357 | Tandem non-canonical cWW pairs | homologous IL_8C3A_060 NA | |
| IL_8OI5_058 | 1/1/1372:1374, 1/1/1424:1427 | No text annotation | homologous IL_8C3A_061 NA | |
| IL_8OI5_059 | 1/1/1381:1383, 1/1/1416:1417 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8OI5_060 | 1/1/1384:1391, 1/1/1411:1415 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8OI5_061 | 1/1/1394:1397, 1/1/1406:1408 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_8OI5_062 | 1/1/1440:1446, 1/1/2332:2337 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8OI5_063 | 1/1/1497:1501, 1/1/1509:1511 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8OI5_064 | 1/1/1528:1532, 1/1/1581:1586 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8OI5_065 | 1/1/1556:1558, 1/1/1573:1574 | Single bulged U | homologous IL_8C3A_068 NA | |
| IL_8OI5_066 | 1/1/1614:1617, 1/1/1820:1822 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8OI5_460 | 1/1/1619:1620, 1/1/1815:1818 | No text annotation | homologous IL_8CRE_070 IL_82107.4 | |
| IL_8OI5_068 | 1/1/1623:1627, 1/1/1807:1812 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_8OI5_069 | 1/1/1641:1645, 1/1/1802:1806 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8OI5_070 | 1/1/1657:1659, 1/1/1782:1784 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8OI5_071 | 1/1/1665:1666, 1/1/1774:1776 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8OI5_072 | 1/1/1666:1667, 1/1/1772:1774 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8OI5_073 | 1/1/1690:1694, 1/1/1743:1748 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_8OI5_074 | 1/1/1698:1703, 1/1/1733:1739 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_8OI5_075 | 1/1/1707:1713, 1/1/1723:1729 | No text annotation | homologous IL_8C3A_079 NA | |
| IL_8OI5_076 | 1/1/1879:1885, 1/1/2324:2327 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8OI5_077 | 1/1/1891:1893, 1/1/2316:2318 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8OI5_078 | 1/1/1894:1897, 1/1/2314:2315 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8OI5_079 | 1/1/1894:1902, 1/1/2311:2315 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_8OI5_080 | 1/1/1897:1902, 1/1/2311:2314 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8OI5_081 | 1/1/1914:1919, 1/1/1924:1930 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8OI5_082 | 1/1/1936:1938, 1/1/2084:2086 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8OI5_083 | 1/1/1943:1944, 1/1/2076:2079 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8OI5_084 | 1/1/2106:2107, 1/1/2301:2303 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8OI5_085 | 1/1/2134:2139, 1/1/2151:2158 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8OI5_086 | 1/1/2174:2177, 1/1/2223:2224 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8OI5_087 | 1/1/2178:2179, 1/1/2219:2222 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8OI5_088 | 1/1/2182:2184, 1/1/2215:2216 | Single stack bend | homologous IL_8C3A_091 NA | |
| IL_8OI5_089 | 1/1/2184:2188, 1/1/2213:2215 | No text annotation | geometric IL_8C3A_092 NA | |
| IL_8OI5_090 | 1/1/2189:2195, 1/1/2206:2212 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8OI5_091 | 1/1/2254:2255, 1/1/2285:2288 | No text annotation | geometric IL_8C3A_094 NA | |
| IL_8OI5_092 | 1/1/2255:2266, 1/1/2282:2285 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8OI5_093 | 1/1/2369:2372, 1/1/2958:2960 | No text annotation | homologous IL_8P9A_319 IL_55516.2 | |
| IL_8OI5_094 | 1/1/2374:2376, 1/1/2953:2956 | No text annotation | homologous IL_8P9A_320 IL_83389.2 | |
| IL_8OI5_095 | 1/1/2387:2389, 1/1/2783:2784 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8OI5_096 | 1/1/2390:2391, 1/1/2779:2782 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8OI5_097 | 1/1/2401:2403, 1/1/2576:2579 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8OI5_098 | 1/1/2498:2504, 1/1/2556:2559 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8OI5_099 | 1/1/2586:2587, 1/1/2597:2599 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8OI5_100 | 1/1/2638:2640, 1/1/2658:2662 | No text annotation | homologous IL_8C3A_108 NA | |
| IL_8OI5_101 | 1/1/2690:2693, 1/1/2707:2710 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_8OI5_102 | 1/1/2742:2745, 1/1/2759:2760 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_8OI5_103 | 1/1/2795:2798, 1/1/2835:2839 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8OI5_104 | 1/1/2798:2800, 1/1/2834:2835 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_8OI5_105 | 1/1/2800:2802, 1/1/2830:2834 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8OI5_106 | 1/1/2807:2811, 1/1/2821:2825 | No text annotation | homologous IL_8C3A_114 NA | |
| IL_8OI5_107 | 1/1/2848:2849, 1/1/2921:2923 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8OI5_108 | 1/1/2851:2853, 1/1/2915:2919 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8OI5_110 | 1/1/2861:2863, 1/1/2884:2886 | Isolated non-canonical cWW pair | geometric IL_8C3A_118 NA | |
| IL_8OI5_111 | 1/1/2863:2864, 1/1/2881:2884 | Major groove platform with intercalation | homologous IL_8C3A_119 NA | |
| IL_8OI5_112 | 1/1/2890:2892, 1/1/2898:2900 | Isolated non-canonical cWW pair | homologous IL_8C3A_120 NA | |
| IL_8OI5_113 | 1/1/2932:2933, 1/1/2942:2944 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_8OI5_114 | 1/1/2976:2979, 1/1/3111:3116 | Double sheared | homologous IL_8P9A_342 IL_09705.15 | |
| IL_8OI5_115 | 1/1/2984:2986, 1/1/3012:3014 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8OI5_116 | 1/1/2990:2997, 1/1/3002:3008 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8OI5_117 | 1/1/3019:3023, 1/1/3063:3066 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_8OI5_118 | 1/1/3026:3031, 1/1/3056:3060 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8OI5_119 | 1/1/3035:3036, 1/1/3049:3052 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8OI5_120 | 1/1/3075:3079, 1/1/3099:3103 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8OI5_121 | 1/1/3134:3136, 1/1/3249:3251 | Isolated non-canonical cWW pair | homologous IL_8C3A_130 NA | |
| IL_8OI5_122 | 1/1/3147:3149, 1/1/3175:3176 | Single bulged A | homologous IL_8C3A_131 NA | |
| IL_8OI5_123 | 1/1/3149:3158, 1/1/3169:3175 | No text annotation | homologous IL_8C3A_132 NA | |
| IL_8OI5_124 | 1/1/3190:3194, 1/1/3223:3225 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_8OI5_125 | 1/1/3200:3203, 1/1/3214:3217 | Tandem non-canonical cWW pairs | homologous IL_8C3A_134 NA | |
| IL_8OI5_126 | 1/1/3265:3268, 1/1/3276:3279 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_8OI5_127 | 1/1/3283:3285, 1/1/3352:3353 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_8OI5_128 | 1/1/3289:3290, 1/1/3346:3348 | Single bulged U | homologous IL_8C3A_137 NA | |
| IL_8OI5_129 | 1/1/3293:3295, 1/1/3338:3343 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8OI5_130 | 1/1/3297:3302, 1/1/3332:3336 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8OI5_131 | 1/1/3305:3307, 1/1/3328:3329 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8OI5_132 | 1/1/3307:3310, 1/1/3325:3328 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8OI5_133 | 1/1/3314:3315, 1/1/3318:3321 | Multiple bulged bases | homologous IL_8C3A_142 NA | |
| IL_8OI5_134 | 1/3/15:16, 1/3/63:65 | Single bulged A IL_31462.5 | ||
| IL_8OI5_135 | 1/3/21:27, 1/3/53:58 | Minor groove platform related IL_18487.1 | ||
| IL_8OI5_136 | 1/3/28:29, 1/3/49:52 | No text annotation IL_15052.4 | ||
| IL_8OI5_137 | 1/3/29:30, 1/3/47:49 | Single stack bend IL_90729.1 | ||
| IL_8OI5_138 | 1/3/32:36, 1/3/41:45 | No text annotation IL_58103.11 | ||
| IL_8OI5_139 | 1/3/72:80, 1/3/100:106 | 8x7 Sarcin-Ricin; G-bulge IL_04346.10 | ||
| IL_8OI5_140 | 1/3/84:87, 1/3/94:96 | Isolated non-canonical cWW pair IL_87907.2 | ||
| IL_8OI5_141 | 1/4/64:66, 1/4/93:96 | No text annotation | homologous IL_8C3A_151 NA | |
| IL_8OI5_142 | 1/4/67:68, 1/4/90:92 | Single bulged C | homologous IL_8C3A_152 NA | |
| IL_8OI5_144 | 1/AS/6:7, 1/AU/150:152 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8OI5_145 | 1/AS/12:14, 1/AU/144:145 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8OI5_147 | 1/AS/30:37, 1/AS/44:52 | No text annotation | homologous IL_8P9A_234 IL_84694.2 | |
| IL_8OI5_148 | 1/AS/81:88, 1/AS/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8OI5_149 | 1/AS/122:123, 1/AS/143:148 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8OI5_155 | 1/AS/188:190, 1/AS/203:204 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8OI5_156 | 1/AS/337:339, 1/AU/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8OI5_157 | 1/AS/376:379, 1/AS/390:403 | No text annotation | geometric IL_8C3A_015 NA | |
| IL_8OI5_158 | 1/AS/404:410, 1/AU/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8OI5_160 | 1/AS/505:507, 1/AS/578:579 | Single bulged A | homologous IL_8C3A_019 NA | |
| IL_8OI5_161 | 1/AS/508:509, 1/AS/575:577 | Single bulged A | homologous IL_8C3A_020 NA | |
| IL_8OI5_162 | 1/AS/513:522, 1/AS/564:571 | No text annotation | homologous IL_8C3A_021 NA | |
| IL_8OI5_163 | 1/AS/527:534, 1/AS/551:559 | No text annotation | homologous IL_8C3A_022 NA | |
| IL_8OI5_164 | 1/AS/666:668, 1/AS/788:790 | Isolated non-canonical cWW pair | homologous IL_8C3A_023 NA | |
| IL_8OI5_165 | 1/AS/678:682, 1/AS/694:698 | No text annotation | homologous IL_8C3A_024 NA | |
| IL_8OI5_166 | 1/AS/723:726, 1/AS/737:741 | No text annotation | homologous IL_8C3A_025 NA | |
| IL_8OI5_167 | 1/AS/748:749, 1/AS/775:777 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8OI5_168 | 1/AS/751:752, 1/AS/771:773 | Single bulged U | homologous IL_8C3A_027 NA | |
| IL_8OI5_169 | 1/AS/754:759, 1/AS/764:769 | No text annotation | homologous IL_8C3A_028 NA | |
| IL_8OI5_170 | 1/AS/799:801, 1/AS/934:936 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8OI5_171 | 1/AS/801:805, 1/AS/927:934 | No text annotation | homologous IL_8C3A_030 NA | |
| IL_8OI5_172 | 1/AS/824:825, 1/AS/891:893 | Single bulged A | homologous IL_8C3A_031 NA | |
| IL_8OI5_173 | 1/AS/829:830, 1/AS/855:857 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8OI5_174 | 1/AS/830:834, 1/AS/851:855 | Triple sheared | homologous IL_8C3A_033 NA | |
| IL_8OI5_175 | 1/AS/865:868, 1/AS/884:886 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8OI5_176 | 1/AS/869:871, 1/AS/882:883 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8OI5_177 | 1/AS/903:905, 1/AS/915:919 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8OI5_178 | 1/AS/950:952, 1/AS/961:963 | Isolated non-canonical cWW pair | homologous IL_8P9A_262 IL_28037.2 | |
| IL_8OI5_179 | 1/AS/965:966, 1/AS/1107:1109 | No text annotation | homologous IL_8C3A_038 NA | |
| IL_8OI5_180 | 1/AS/973:978, 1/AS/1097:1100 | Kink-turn related | homologous IL_8C3A_039 NA | |
| IL_8OI5_181 | 1/AS/979:981, 1/AS/1095:1096 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8OI5_182 | 1/AS/987:993, 1/AS/1048:1054 | No text annotation | homologous IL_8P9A_266 IL_29198.2 | |
| IL_8OI5_183 | 1/AS/993:994, 1/AS/1046:1048 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8OI5_184 | 1/AS/995:1000, 1/AS/1042:1045 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8OI5_185 | 1/AS/1002:1005, 1/AS/1037:1040 | No text annotation | homologous IL_8C3A_481 NA | |
| IL_8OI5_186 | 1/AS/1005:1007, 1/AS/1035:1037 | Isolated non-canonical cWW pair | homologous IL_8P9A_270 IL_87907.2 | |
| IL_8OI5_187 | 1/AS/1010:1014, 1/AS/1030:1032 | No text annotation | geometric IL_7DLZ_003 IL_07785.1 | |
| IL_8OI5_188 | 1/AS/1065:1067, 1/AS/1083:1085 | Isolated non-canonical cWW pair | homologous IL_8C3A_047 NA | |
| IL_8OI5_189 | 1/AS/1070:1072, 1/AS/1079:1080 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8OI5_190 | 1/AS/1116:1118, 1/AS/1132:1134 | Isolated non-canonical cWW pair | homologous IL_8C3A_049 NA | |
| IL_8OI5_192 | 1/AS/1163:1167, 1/AS/1324:1328 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8OI5_193 | 1/AS/1169:1176, 1/AS/1321:1322 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8OI5_194 | 1/AS/1176:1178, 1/AS/1320:1321 | Single bulged U | homologous IL_8C3A_053 NA | |
| IL_8OI5_195 | 1/AS/1183:1190, 1/AS/1310:1315 | No text annotation | homologous IL_8C3A_054 NA | |
| IL_8OI5_196 | 1/AS/1190:1201, 1/AS/1295:1310 | No text annotation | homologous IL_8C3A_055 NA | |
| IL_8OI5_197 | 1/AS/1203:1205, 1/AS/1292:1293 | Single bulged U | homologous IL_8C3A_056 NA | |
| IL_8OI5_198 | 1/AS/1339:1342, 1/AS/1354:1357 | Tandem non-canonical cWW pairs | homologous IL_8C3A_060 NA | |
| IL_8OI5_199 | 1/AS/1372:1374, 1/AS/1424:1427 | No text annotation | homologous IL_8P9A_285 IL_42997.3 | |
| IL_8OI5_201 | 1/AS/1384:1391, 1/AS/1411:1415 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8OI5_202 | 1/AS/1394:1397, 1/AS/1406:1408 | Isolated non-canonical cWW pair | homologous IL_8C3A_064 NA | |
| IL_8OI5_203 | 1/AS/1440:1446, 1/AS/2332:2337 | No text annotation | homologous IL_8C3A_065 NA | |
| IL_8OI5_204 | 1/AS/1497:1501, 1/AS/1509:1511 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8OI5_205 | 1/AS/1528:1532, 1/AS/1581:1586 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8OI5_207 | 1/AS/1614:1617, 1/AS/1820:1822 | No text annotation | homologous IL_8C3A_070 NA | |
| IL_8OI5_209 | 1/AS/1623:1627, 1/AS/1807:1812 | No text annotation | homologous IL_8C3A_072 NA | |
| IL_8OI5_210 | 1/AS/1641:1645, 1/AS/1802:1806 | Triple sheared | homologous IL_8C3A_073 NA | |
| IL_8OI5_211 | 1/AS/1657:1659, 1/AS/1782:1784 | Isolated non-canonical cWW pair | homologous IL_8C3A_074 NA | |
| IL_8OI5_212 | 1/AS/1665:1666, 1/AS/1774:1776 | Single bulged C | homologous IL_8C3A_075 NA | |
| IL_8OI5_213 | 1/AS/1666:1667, 1/AS/1772:1774 | Single stack bend | homologous IL_8C3A_076 NA | |
| IL_8OI5_214 | 1/AS/1690:1694, 1/AS/1743:1748 | No text annotation | homologous IL_8C3A_077 NA | |
| IL_8OI5_215 | 1/AS/1698:1703, 1/AS/1733:1739 | No text annotation | homologous IL_8C3A_078 NA | |
| IL_8OI5_462 | 1/AS/1707:1713, 1/AS/1723:1729 | No text annotation | homologous IL_8CRE_078 IL_69543.3 | |
| IL_8OI5_217 | 1/AS/1879:1885, 1/AS/2324:2327 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8OI5_218 | 1/AS/1891:1893, 1/AS/2316:2318 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8OI5_219 | 1/AS/1894:1897, 1/AS/2314:2315 | Major groove platform; stack outside cWW | geometric IL_8C3A_082 NA | |
| IL_8OI5_220 | 1/AS/1894:1902, 1/AS/2311:2315 | No text annotation | geometric IL_8C3A_484 NA | |
| IL_8OI5_221 | 1/AS/1897:1902, 1/AS/2311:2314 | No text annotation | homologous IL_8C3A_083 NA | |
| IL_8OI5_222 | 1/AS/1914:1919, 1/AS/1924:1930 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8OI5_223 | 1/AS/1936:1938, 1/AS/2084:2086 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8OI5_224 | 1/AS/1943:1944, 1/AS/2076:2079 | No text annotation | homologous IL_8C3A_086 NA | |
| IL_8OI5_225 | 1/AS/2106:2107, 1/AS/2301:2303 | Single bulged A | homologous IL_8C3A_087 NA | |
| IL_8OI5_226 | 1/AS/2134:2139, 1/AS/2151:2158 | No text annotation | homologous IL_8C3A_088 NA | |
| IL_8OI5_227 | 1/AS/2174:2177, 1/AS/2223:2224 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8OI5_228 | 1/AS/2178:2179, 1/AS/2219:2222 | Multiple bulged bases | homologous IL_8C3A_090 NA | |
| IL_8OI5_229 | 1/AS/2182:2184, 1/AS/2215:2216 | Single stack bend | geometric IL_8C3A_091 NA | |
| IL_8OI5_230 | 1/AS/2182:2188, 1/AS/2213:2216 | No text annotation | ||
| IL_8OI5_231 | 1/AS/2184:2188, 1/AS/2213:2215 | No text annotation | homologous IL_8C3A_092 NA | |
| IL_8OI5_232 | 1/AS/2189:2195, 1/AS/2206:2212 | No text annotation | homologous IL_8C3A_093 NA | |
| IL_8OI5_234 | 1/AS/2255:2266, 1/AS/2282:2285 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8OI5_235 | 1/AS/2369:2372, 1/AS/2958:2960 | No text annotation | homologous IL_8C3A_096 NA | |
| IL_8OI5_236 | 1/AS/2374:2376, 1/AS/2953:2956 | No text annotation | homologous IL_8C3A_097 NA | |
| IL_8OI5_237 | 1/AS/2387:2389, 1/AS/2783:2784 | Single bulged U | homologous IL_8C3A_098 NA | |
| IL_8OI5_238 | 1/AS/2390:2391, 1/AS/2779:2782 | Minor groove platform | homologous IL_8C3A_099 NA | |
| IL_8OI5_239 | 1/AS/2401:2403, 1/AS/2576:2579 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8OI5_241 | 1/AS/2586:2587, 1/AS/2597:2599 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8OI5_242 | 1/AS/2638:2640, 1/AS/2658:2662 | No text annotation | homologous IL_8P9A_326 IL_61476.2 | |
| IL_8OI5_243 | 1/AS/2690:2693, 1/AS/2707:2710 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_8OI5_244 | 1/AS/2742:2745, 1/AS/2759:2760 | Single stack bend with bulge | homologous IL_8C3A_110 NA | |
| IL_8OI5_245 | 1/AS/2795:2798, 1/AS/2835:2839 | No text annotation | homologous IL_8C3A_111 NA | |
| IL_8OI5_246 | 1/AS/2798:2800, 1/AS/2834:2835 | Major groove platform | homologous IL_8C3A_112 NA | |
| IL_8OI5_247 | 1/AS/2800:2802, 1/AS/2830:2834 | Major groove minor groove platform with extra cWW | homologous IL_8C3A_113 NA | |
| IL_8OI5_248 | 1/AS/2807:2811, 1/AS/2821:2825 | No text annotation | homologous IL_8P9A_333 IL_17948.2 | |
| IL_8OI5_249 | 1/AS/2848:2849, 1/AS/2921:2923 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8OI5_250 | 1/AS/2851:2853, 1/AS/2915:2919 | No text annotation | homologous IL_8P9A_335 IL_07785.1 | |
| IL_8OI5_251 | 1/AS/2853:2854, 1/AS/2912:2915 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8OI5_252 | 1/AS/2861:2863, 1/AS/2884:2886 | Isolated non-canonical cWW pair | geometric IL_8C3A_118 NA | |
| IL_8OI5_253 | 1/AS/2861:2864, 1/AS/2881:2886 | No text annotation | geometric IL_8C3A_486 NA | |
| IL_8OI5_254 | 1/AS/2863:2864, 1/AS/2881:2884 | No text annotation | homologous IL_8P9A_339 IL_02555.1 | |
| IL_8OI5_255 | 1/AS/2890:2892, 1/AS/2898:2900 | Isolated non-canonical cWW pair | homologous IL_8P9A_340 IL_87907.2 | |
| IL_8OI5_256 | 1/AS/2932:2933, 1/AS/2942:2944 | Single bulged A | homologous IL_8C3A_122 NA | |
| IL_8OI5_257 | 1/AS/2976:2979, 1/AS/3111:3116 | Double sheared | homologous IL_8C3A_123 NA | |
| IL_8OI5_258 | 1/AS/2984:2986, 1/AS/3012:3014 | Isolated non-canonical cWW pair | homologous IL_8C3A_124 NA | |
| IL_8OI5_259 | 1/AS/2990:2997, 1/AS/3002:3008 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_125 NA | |
| IL_8OI5_260 | 1/AS/3019:3023, 1/AS/3063:3066 | Major groove minor groove platform with tHH | homologous IL_8C3A_126 NA | |
| IL_8OI5_261 | 1/AS/3026:3031, 1/AS/3056:3060 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8OI5_262 | 1/AS/3035:3036, 1/AS/3049:3052 | No text annotation | homologous IL_8C3A_128 NA | |
| IL_8OI5_263 | 1/AS/3075:3079, 1/AS/3099:3103 | UAA/GAN | homologous IL_8C3A_129 NA | |
| IL_8OI5_265 | 1/AS/3147:3149, 1/AS/3175:3176 | Single bulged A | homologous IL_8C3A_131 NA | |
| IL_8OI5_266 | 1/AS/3149:3158, 1/AS/3169:3175 | No text annotation | homologous IL_8C3A_132 NA | |
| IL_8OI5_267 | 1/AS/3190:3194, 1/AS/3223:3225 | No text annotation | homologous IL_8C3A_133 NA | |
| IL_8OI5_268 | 1/AS/3200:3203, 1/AS/3214:3217 | Tandem non-canonical cWW pairs | homologous IL_8C3A_134 NA | |
| IL_8OI5_269 | 1/AS/3265:3268, 1/AS/3276:3279 | Tandem non-canonical cWW pairs | homologous IL_8C3A_135 NA | |
| IL_8OI5_270 | 1/AS/3283:3285, 1/AS/3352:3353 | Single bulged U | homologous IL_8C3A_136 NA | |
| IL_8OI5_271 | 1/AS/3289:3290, 1/AS/3346:3348 | Single bulged U | homologous IL_8P9A_358 IL_89505.4 | |
| IL_8OI5_272 | 1/AS/3293:3295, 1/AS/3338:3343 | No text annotation | homologous IL_8C3A_138 NA | |
| IL_8OI5_273 | 1/AS/3297:3302, 1/AS/3332:3336 | No text annotation | homologous IL_8C3A_139 NA | |
| IL_8OI5_274 | 1/AS/3305:3307, 1/AS/3328:3329 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8OI5_275 | 1/AS/3307:3310, 1/AS/3325:3328 | Double sheared; A in syn | homologous IL_8C3A_141 NA | |
| IL_8OI5_277 | 1/AT/15:16, 1/AT/63:65 | Single bulged A | homologous IL_8C3A_143 NA | |
| IL_8OI5_278 | 1/AT/21:27, 1/AT/53:58 | Minor groove platform related | homologous IL_8C3A_144 NA | |
| IL_8OI5_279 | 1/AT/28:29, 1/AT/49:52 | No text annotation | homologous IL_8C3A_145 NA | |
| IL_8OI5_280 | 1/AT/29:30, 1/AT/47:49 | Single stack bend | homologous IL_8C3A_146 NA | |
| IL_8OI5_281 | 1/AT/32:36, 1/AT/41:45 | No text annotation | homologous IL_8C3A_147 NA | |
| IL_8OI5_282 | 1/AT/72:80, 1/AT/100:106 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_8C3A_148 NA | |
| IL_8OI5_283 | 1/AT/84:87, 1/AT/94:96 | Isolated non-canonical cWW pair | homologous IL_8C3A_149 NA | |
| IL_8OI5_284 | 1/AU/64:66, 1/AU/93:96 | No text annotation | homologous IL_8C3A_151 NA | |
| IL_8OI5_286 | 1/B/24:26, 1/B/598:599 | Single bulged C | homologous IL_8C3A_392 NA | |
| IL_8OI5_287 | 1/B/35:37, 1/B/469:471 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_8OI5_288 | 1/B/37:41, 1/B/464:469 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8OI5_289 | 1/B/42:48, 1/B/429:431 | No text annotation | geometric IL_4V88_387 NA | |
| IL_8OI5_290 | 1/B/50:52, 1/B/426:427 | Minor groove platform | homologous IL_8P9A_377 IL_51454.2 | |
| IL_8OI5_291 | 1/B/58:63, 1/B/87:89 | No text annotation | homologous IL_8C3A_397 NA | |
| IL_8OI5_292 | 1/B/64:69, 1/B/82:86 | No text annotation | homologous IL_8C3A_398 NA | |
| IL_8OI5_293 | 1/B/109:112, 1/B/300:303 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
| IL_8OI5_294 | 1/B/113:116, 1/B/298:299 | Multiple bulged bases | homologous IL_8P9A_381 IL_82107.4 | |
| IL_8OI5_295 | 1/B/117:122, 1/B/293:297 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_8OI5_296 | 1/B/141:147, 1/B/163:170 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8OI5_297 | 1/B/147:150, 1/B/160:163 | No text annotation | homologous IL_8C3A_403 NA | |
| IL_8OI5_298 | 1/B/184:187, 1/B/194:197 | Double sheared | homologous IL_8C3A_404 NA | |
| IL_8OI5_299 | 1/B/202:204, 1/B/257:261 | Major groove platform with extra cWW | homologous IL_8C3A_405 NA | |
| IL_8OI5_300 | 1/B/204:206, 1/B/255:257 | Isolated non-canonical cWW pair | homologous IL_8C3A_406 NA | |
| IL_8OI5_301 | 1/B/263:266, 1/B/285:287 | Isolated cWH basepair | homologous IL_8C3A_407 NA | |
| IL_8OI5_302 | 1/B/268:271, 1/B/281:283 | No text annotation | homologous IL_8P9A_389 IL_15698.3 | |
| IL_8OI5_304 | 1/B/309:314, 1/B/346:353 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8OI5_305 | 1/B/316:321, 1/B/343:344 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_8OI5_307 | 1/B/387:389, 1/B/404:406 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8OI5_308 | 1/B/409:411, 1/B/418:420 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8OI5_309 | 1/B/437:439, 1/B/461:462 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
| IL_8OI5_310 | 1/B/441:445, 1/B/458:459 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8OI5_311 | 1/B/445:446, 1/B/456:458 | Single bulged G | homologous IL_8C3A_417 NA | |
| IL_8OI5_314 | 1/B/515:516, 1/B/531:533 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_8OI5_315 | 1/B/516:518, 1/B/530:531 | Minor groove platform | homologous IL_8C3A_422 NA | |
| IL_8OI5_316 | 1/B/548:555, 1/B/585:586 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8OI5_317 | 1/B/555:557, 1/B/584:585 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8OI5_318 | 1/B/560:566, 1/B/573:581 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_8OI5_319 | 1/B/614:620, 1/B/1089:1090 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8OI5_320 | 1/B/622:624, 1/B/958:960 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8OI5_321 | 1/B/625:629, 1/B/953:957 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8OI5_322 | 1/B/648:656, 1/B/671:682 | No text annotation | ||
| IL_8OI5_323 | 1/B/731:732, 1/B/786:789 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8OI5_324 | 1/B/733:735, 1/B/783:785 | Isolated non-canonical cWW pair | homologous IL_8C3A_431 NA | |
| IL_8OI5_325 | 1/B/736:744, 1/B/775:782 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8OI5_326 | 1/B/803:806, 1/B/836:837 | No text annotation | homologous IL_8C3A_434 NA | |
| IL_8OI5_328 | 1/B/853:855, 1/B/942:945 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_8OI5_329 | 1/B/856:859, 1/B/938:941 | Tandem non-canonical cWW pairs | homologous IL_8C3A_437 NA | |
| IL_8OI5_330 | 1/B/859:863, 1/B/935:938 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8OI5_331 | 1/B/870:873, 1/B/909:912 | No text annotation | homologous IL_8P9A_421 IL_85033.2 | |
| IL_8OI5_332 | 1/B/878:884, 1/B/895:904 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8OI5_333 | 1/B/970:975, 1/B/999:1001 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8OI5_334 | 1/B/975:979, 1/B/995:999 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8OI5_335 | 1/B/1019:1021, 1/B/1080:1086 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8OI5_336 | 1/B/1026:1029, 1/B/1059:1062 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8OI5_337 | 1/B/1036:1039, 1/B/1050:1052 | Isolated cWH basepair | homologous IL_8C3A_504 NA | |
| IL_8OI5_338 | 1/B/1096:1103, 1/B/1114:1119 | No text annotation | homologous IL_8C3A_446 NA | |
| IL_8OI5_339 | 1/B/1131:1132, 1/B/1617:1619 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8OI5_340 | 1/B/1134:1136, 1/B/1614:1615 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8OI5_341 | 1/B/1142:1145, 1/B/1604:1608 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8OI5_342 | 1/B/1158:1160, 1/B/1450:1452 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_8OI5_343 | 1/B/1163:1164, 1/B/1445:1447 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8OI5_344 | 1/B/1198:1200, 1/B/1434:1436 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8OI5_345 | 1/B/1209:1219, 1/B/1236:1244 | No text annotation | homologous IL_8C3A_453 NA | |
| IL_8OI5_346 | 1/B/1219:1221, 1/B/1234:1236 | Other IL | homologous IL_8C3A_454 NA | |
| IL_8OI5_347 | 1/B/1253:1255, 1/B/1426:1427 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8OI5_348 | 1/B/1257:1261, 1/B/1422:1424 | No text annotation | geometric IL_8C3A_456 NA | |
| IL_8OI5_349 | 1/B/1257:1264, 1/B/1415:1424 | No text annotation | geometric IL_8C3A_505 NA | |
| IL_8OI5_350 | 1/B/1261:1264, 1/B/1415:1422 | No text annotation | homologous IL_8C3A_457 NA | |
| IL_8OI5_351 | 1/B/1265:1266, 1/B/1412:1414 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8OI5_352 | 1/B/1275:1277, 1/B/1308:1310 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
| IL_8OI5_353 | 1/B/1291:1293, 1/B/1302:1303 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8OI5_354 | 1/B/1324:1328, 1/B/1368:1371 | No text annotation | homologous IL_8C3A_461 NA | |
| IL_8OI5_463 | 1/B/1330:1333, 1/B/1363:1366 | No text annotation | homologous IL_8CRE_481 IL_78800.1 | |
| IL_8OI5_357 | 1/B/1375:1377, 1/B/1393:1398 | No text annotation | geometric IL_8C3A_465 NA | |
| IL_8OI5_358 | 1/B/1466:1473, 1/B/1506:1514 | No text annotation | homologous IL_8C3A_466 NA | |
| IL_8OI5_359 | 1/B/1474:1481, 1/B/1500:1505 | 180 degree turn | homologous IL_8C3A_467 NA | |
| IL_8OI5_360 | 1/B/1483:1485, 1/B/1496:1498 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_8OI5_361 | 1/B/1527:1532, 1/B/1553:1558 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_8OI5_362 | 1/B/1623:1625, 1/B/1751:1754 | No text annotation | homologous IL_8C3A_470 NA | |
| IL_8OI5_363 | 1/B/1625:1628, 1/B/1747:1751 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8OI5_364 | 1/B/1629:1631, 1/B/1744:1746 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8OI5_365 | 1/B/1631:1634, 1/B/1740:1744 | Decoding loop related | geometric IL_2O3V_002 IL_64231.5 | |
| IL_8OI5_366 | 1/B/1637:1639, 1/B/1735:1737 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8OI5_367 | 1/B/1640:1643, 1/B/1731:1734 | Double sheared | homologous IL_8C3A_475 NA | |
| IL_8OI5_368 | 1/B/1643:1645, 1/B/1730:1731 | Single bulged U | homologous IL_8P9A_458 IL_89505.4 | |
| IL_8OI5_369 | 1/B/1652:1654, 1/B/1721:1723 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8OI5_370 | 1/B/1656:1659, 1/B/1716:1719 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8OI5_371 | 1/B/1662:1665, 1/B/1710:1713 | Tandem non-canonical cWW pairs | homologous IL_8C3A_479 NA | |
| IL_8OI5_372 | 1/B/1665:1669, 1/B/1706:1710 | Triple sheared | homologous IL_8C3A_480 NA | |
| IL_8OI5_373 | 1/CM/24:26, 1/CM/598:599 | Single bulged C | homologous IL_8C3A_392 NA | |
| IL_8OI5_374 | 1/CM/35:37, 1/CM/469:471 | Isolated non-canonical cWW pair | geometric IL_8C3A_393 NA | |
| IL_8OI5_375 | 1/CM/37:41, 1/CM/464:469 | Triple sheared related | homologous IL_8C3A_394 NA | |
| IL_8OI5_376 | 1/CM/42:48, 1/CM/429:431 | No text annotation | geometric IL_8C3A_395 NA | |
| IL_8OI5_377 | 1/CM/50:52, 1/CM/426:427 | Minor groove platform | homologous IL_8P9A_377 IL_51454.2 | |
| IL_8OI5_378 | 1/CM/58:63, 1/CM/87:89 | No text annotation | homologous IL_8C3A_397 NA | |
| IL_8OI5_379 | 1/CM/64:69, 1/CM/82:86 | No text annotation | homologous IL_8C3A_398 NA | |
| IL_8OI5_380 | 1/CM/109:112, 1/CM/300:303 | Tandem non-canonical cWW pairs | homologous IL_8C3A_399 NA | |
| IL_8OI5_381 | 1/CM/113:116, 1/CM/298:299 | Multiple bulged bases | homologous IL_8C3A_400 NA | |
| IL_8OI5_382 | 1/CM/117:122, 1/CM/293:297 | No text annotation | homologous IL_8C3A_401 NA | |
| IL_8OI5_383 | 1/CM/141:147, 1/CM/163:170 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8OI5_384 | 1/CM/147:150, 1/CM/160:163 | No text annotation | homologous IL_8C3A_403 NA | |
| IL_8OI5_385 | 1/CM/184:187, 1/CM/194:197 | Double sheared | homologous IL_8C3A_404 NA | |
| IL_8OI5_386 | 1/CM/202:204, 1/CM/257:261 | Major groove platform with extra cWW | homologous IL_8C3A_405 NA | |
| IL_8OI5_387 | 1/CM/204:206, 1/CM/255:257 | Isolated non-canonical cWW pair | homologous IL_8C3A_406 NA | |
| IL_8OI5_388 | 1/CM/263:266, 1/CM/285:287 | Isolated cWH basepair | homologous IL_8C3A_407 NA | |
| IL_8OI5_389 | 1/CM/268:271, 1/CM/281:283 | No text annotation | homologous IL_8C3A_408 NA | |
| IL_8OI5_391 | 1/CM/309:314, 1/CM/346:353 | Kink-turn with non-sequential stacking | homologous IL_8C3A_410 NA | |
| IL_8OI5_392 | 1/CM/316:321, 1/CM/343:344 | No text annotation | homologous IL_8C3A_411 NA | |
| IL_8OI5_393 | 1/CM/361:363, 1/CM/374:379 | No text annotation | homologous IL_8C3A_412 NA | |
| IL_8OI5_394 | 1/CM/387:389, 1/CM/404:406 | Isolated cWH basepair | homologous IL_8C3A_413 NA | |
| IL_8OI5_395 | 1/CM/409:411, 1/CM/418:420 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8OI5_396 | 1/CM/437:439, 1/CM/461:462 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
| IL_8OI5_397 | 1/CM/441:445, 1/CM/458:459 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8OI5_398 | 1/CM/445:446, 1/CM/456:458 | Single bulged G | homologous IL_8P9A_398 IL_00225.13 | |
| IL_8OI5_400 | 1/CM/485:487, 1/CM/495:498 | No text annotation | homologous IL_8C3A_419 NA | |
| IL_8OI5_401 | 1/CM/512:514, 1/CM/534:541 | No text annotation | homologous IL_8C3A_420 NA | |
| IL_8OI5_402 | 1/CM/515:516, 1/CM/531:533 | Minor groove platform | homologous IL_8C3A_501 NA | |
| IL_8OI5_403 | 1/CM/516:518, 1/CM/530:531 | Minor groove platform | homologous IL_8C3A_422 NA | |
| IL_8OI5_404 | 1/CM/548:555, 1/CM/585:586 | SSU/LSU pseudoknot | homologous IL_8C3A_423 NA | |
| IL_8OI5_405 | 1/CM/555:557, 1/CM/584:585 | Single bulged U | homologous IL_8C3A_424 NA | |
| IL_8OI5_406 | 1/CM/560:566, 1/CM/573:581 | Kink-turn related | homologous IL_8C3A_425 NA | |
| IL_8OI5_407 | 1/CM/614:620, 1/CM/1089:1090 | No text annotation | homologous IL_8C3A_426 NA | |
| IL_8OI5_408 | 1/CM/622:624, 1/CM/958:960 | Isolated non-canonical cWW pair | homologous IL_8C3A_427 NA | |
| IL_8OI5_409 | 1/CM/625:629, 1/CM/953:957 | tSH-tHW-tHS | homologous IL_8C3A_428 NA | |
| IL_8OI5_410 | 1/CM/648:656, 1/CM/669:682 | No text annotation | homologous IL_8C3A_502 NA | |
| IL_8OI5_411 | 1/CM/731:732, 1/CM/786:789 | Major groove minor groove platform; mini C-loop | homologous IL_8C3A_430 NA | |
| IL_8OI5_412 | 1/CM/733:735, 1/CM/783:785 | Isolated non-canonical cWW pair | homologous IL_8P9A_413 IL_28037.2 | |
| IL_8OI5_413 | 1/CM/736:744, 1/CM/775:782 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8OI5_414 | 1/CM/803:806, 1/CM/836:837 | No text annotation | homologous IL_8C3A_434 NA | |
| IL_8OI5_415 | 1/CM/853:855, 1/CM/942:945 | Isolated cWH basepair | homologous IL_8C3A_510 NA | |
| IL_8OI5_416 | 1/CM/856:859, 1/CM/938:941 | Tandem non-canonical cWW pairs | homologous IL_8C3A_437 NA | |
| IL_8OI5_417 | 1/CM/859:863, 1/CM/935:938 | Tandem non-canonical cWW pairs | homologous IL_8C3A_438 NA | |
| IL_8OI5_418 | 1/CM/870:873, 1/CM/909:912 | Tandem non-canonical cWW pairs | homologous IL_8C3A_439 NA | |
| IL_8OI5_419 | 1/CM/878:884, 1/CM/895:904 | Kink-turn related | homologous IL_8C3A_440 NA | |
| IL_8OI5_420 | 1/CM/970:975, 1/CM/999:1001 | No text annotation | homologous IL_8C3A_441 NA | |
| IL_8OI5_421 | 1/CM/975:979, 1/CM/995:999 | tSH-tHW-tHS | homologous IL_8C3A_442 NA | |
| IL_8OI5_422 | 1/CM/1019:1021, 1/CM/1080:1086 | No text annotation | homologous IL_8C3A_443 NA | |
| IL_8OI5_423 | 1/CM/1026:1029, 1/CM/1059:1062 | Tandem non-canonical cWW pairs | homologous IL_8C3A_444 NA | |
| IL_8OI5_424 | 1/CM/1036:1039, 1/CM/1050:1052 | Isolated cWH basepair | homologous IL_8C3A_504 NA | |
| IL_8OI5_425 | 1/CM/1096:1103, 1/CM/1114:1119 | No text annotation | homologous IL_8C3A_446 NA | |
| IL_8OI5_426 | 1/CM/1131:1132, 1/CM/1617:1619 | Single bulged A | homologous IL_8C3A_447 NA | |
| IL_8OI5_427 | 1/CM/1134:1136, 1/CM/1614:1615 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8OI5_428 | 1/CM/1142:1145, 1/CM/1604:1608 | C-loop | homologous IL_8C3A_449 NA | |
| IL_8OI5_429 | 1/CM/1158:1160, 1/CM/1450:1452 | Isolated non-canonical cWW pair | homologous IL_8C3A_450 NA | |
| IL_8OI5_430 | 1/CM/1163:1164, 1/CM/1445:1447 | Minor groove platform | homologous IL_8C3A_451 NA | |
| IL_8OI5_431 | 1/CM/1198:1200, 1/CM/1434:1436 | Isolated non-canonical cWW pair | homologous IL_8C3A_452 NA | |
| IL_8OI5_432 | 1/CM/1209:1219, 1/CM/1236:1244 | No text annotation | homologous IL_8C3A_453 NA | |
| IL_8OI5_433 | 1/CM/1219:1221, 1/CM/1234:1236 | Other IL | homologous IL_8C3A_454 NA | |
| IL_8OI5_434 | 1/CM/1253:1255, 1/CM/1426:1427 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8OI5_435 | 1/CM/1257:1261, 1/CM/1422:1424 | No text annotation | geometric IL_8C3A_456 NA | |
| IL_8OI5_436 | 1/CM/1257:1264, 1/CM/1415:1424 | No text annotation | geometric IL_8C3A_505 NA | |
| IL_8OI5_437 | 1/CM/1261:1264, 1/CM/1415:1422 | No text annotation | homologous IL_8C3A_457 NA | |
| IL_8OI5_439 | 1/CM/1275:1277, 1/CM/1308:1310 | Isolated non-canonical cWW pair | homologous IL_8C3A_459 NA | |
| IL_8OI5_440 | 1/CM/1291:1293, 1/CM/1302:1303 | Minor groove platform | homologous IL_8C3A_460 NA | |
| IL_8OI5_441 | 1/CM/1324:1328, 1/CM/1368:1371 | No text annotation | homologous IL_8C3A_461 NA | |
| IL_8OI5_442 | 1/CM/1330:1333, 1/CM/1363:1366 | No text annotation | homologous IL_8C3A_462 NA | |
| IL_8OI5_444 | 1/CM/1375:1377, 1/CM/1393:1398 | No text annotation | geometric IL_8C3A_465 NA | |
| IL_8OI5_445 | 1/CM/1466:1473, 1/CM/1506:1514 | No text annotation | homologous IL_8C3A_466 NA | |
| IL_8OI5_446 | 1/CM/1474:1481, 1/CM/1500:1505 | 180 degree turn | homologous IL_8C3A_467 NA | |
| IL_8OI5_447 | 1/CM/1483:1485, 1/CM/1496:1498 | Isolated non-canonical cWW pair | homologous IL_8C3A_468 NA | |
| IL_8OI5_448 | 1/CM/1527:1532, 1/CM/1553:1558 | No text annotation | homologous IL_8C3A_507 NA | |
| IL_8OI5_449 | 1/CM/1623:1625, 1/CM/1751:1754 | No text annotation | homologous IL_8C3A_470 NA | |
| IL_8OI5_450 | 1/CM/1625:1628, 1/CM/1747:1751 | No text annotation | homologous IL_8C3A_471 NA | |
| IL_8OI5_451 | 1/CM/1629:1631, 1/CM/1744:1746 | Isolated non-canonical cWW pair | homologous IL_8C3A_472 NA | |
| IL_8OI5_452 | 1/CM/1631:1634, 1/CM/1740:1744 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_8OI5_453 | 1/CM/1637:1639, 1/CM/1735:1737 | Isolated non-canonical cWW pair | homologous IL_8C3A_474 NA | |
| IL_8OI5_454 | 1/CM/1640:1643, 1/CM/1731:1734 | Double sheared | homologous IL_8C3A_475 NA | |
| IL_8OI5_455 | 1/CM/1643:1645, 1/CM/1730:1731 | Single bulged U | homologous IL_8C3A_476 NA | |
| IL_8OI5_456 | 1/CM/1652:1654, 1/CM/1721:1723 | Isolated non-canonical cWW pair | homologous IL_8C3A_477 NA | |
| IL_8OI5_457 | 1/CM/1656:1659, 1/CM/1716:1719 | Double sheared | homologous IL_8C3A_478 NA | |
| IL_8OI5_458 | 1/CM/1662:1665, 1/CM/1710:1713 | Tandem non-canonical cWW pairs | homologous IL_8C3A_479 NA | |
| IL_8OI5_459 | 1/CM/1665:1669, 1/CM/1706:1710 | Triple sheared | homologous IL_8C3A_480 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8OI5_001 | No text annotation | ||
| IL_8OI5_050 | No text annotation | ||
| IL_8OI5_067 | No text annotation | ||
| IL_8OI5_109 | No text annotation | ||
| IL_8OI5_143 | No text annotation | ||
| IL_8OI5_146 | No text annotation | ||
| IL_8OI5_150 | Isolated non-canonical cWW pair | ||
| IL_8OI5_151 | No text annotation | ||
| IL_8OI5_152 | No text annotation | ||
| IL_8OI5_153 | No text annotation | ||
| IL_8OI5_154 | Single stack bend | ||
| IL_8OI5_159 | Minor groove platform | ||
| IL_8OI5_191 | No text annotation | ||
| IL_8OI5_200 | Single bulged A | ||
| IL_8OI5_206 | Single bulged U | ||
| IL_8OI5_461 | No text annotation | ||
| IL_8OI5_208 | No text annotation | ||
| IL_8OI5_216 | No text annotation | ||
| IL_8OI5_233 | No text annotation | ||
| IL_8OI5_240 | No text annotation | ||
| IL_8OI5_264 | Isolated non-canonical cWW pair | ||
| IL_8OI5_276 | Multiple bulged bases | ||
| IL_8OI5_285 | Single bulged C | ||
| IL_8OI5_303 | Single bulged U | ||
| IL_8OI5_306 | No text annotation | ||
| IL_8OI5_312 | Single bulged A | ||
| IL_8OI5_313 | Isolated non-canonical cWW pair | ||
| IL_8OI5_327 | No text annotation | ||
| IL_8OI5_355 | No text annotation | ||
| IL_8OI5_356 | No text annotation | ||
| IL_8OI5_390 | Single bulged U | ||
| IL_8OI5_399 | Single bulged A | ||
| IL_8OI5_438 | Single bulged A | ||
| IL_8OI5_443 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8OI5_001 | 1/1/112:122, 1/1/148:157, 1/1/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8OI5_002 | 1/1/112:123, 1/1/143:157, 1/1/263:267 | No text annotation | ||
| J3_8OI5_003 | 1/1/184:188, 1/1/204:213, 1/1/225:230 | No text annotation | homologous J3_8C3A_046 NA | |
| J3_8OI5_004 | 1/1/340:356, 1/1/363:368, 1/4/21:24 | No text annotation | homologous J3_8C3A_047 NA | |
| J3_8OI5_005 | 1/1/369:376, 1/1/403:404, 1/4/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8OI5_006 | 1/1/369:379, 1/1/390:404, 1/4/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8OI5_007 | 1/1/436:439, 1/1/488:490, 1/1/616:621 | No text annotation | homologous J3_8C3A_002 NA | |
| J3_8OI5_008 | 1/1/497:498, 1/1/586:595, 1/1/604:609 | No text annotation | homologous J3_8C3A_050 NA | |
| J3_8OI5_009 | 1/1/810:816, 1/1/901:903, 1/1/919:922 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8OI5_010 | 1/1/825:827, 1/1/859:863, 1/1/888:891 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8OI5_011 | 1/1/982:983, 1/1/1058:1062, 1/1/1088:1094 | No text annotation | homologous J3_8C3A_051 NA | |
| J3_8OI5_012 | 1/1/1475:1481, 1/1/1853:1855, 1/1/1867:1870 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8OI5_013 | 1/1/1484:1487, 1/1/1833:1839, 1/1/1848:1850 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8OI5_014 | 1/1/1522:1527, 1/1/1587:1591, 1/1/1608:1609 | No text annotation | homologous J3_8C3A_052 NA | |
| J3_8OI5_015 | 1/1/1533:1538, 1/1/1547:1556, 1/1/1574:1580 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_8OI5_085 | 1/1/1627:1628, 1/1/1637:1641, 1/1/1806:1807 | No text annotation | homologous J3_8CRE_017 J3_75962.2 | |
| J3_8OI5_017 | 1/1/1650:1654, 1/1/1787:1788, 1/1/1792:1797 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_8OI5_018 | 1/1/2410:2413, 1/1/2490:2495, 1/1/2562:2569 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_8OI5_019 | 1/1/2507:2510, 1/1/2525:2540, 1/1/2550:2553 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8OI5_020 | 1/1/2623:2625, 1/1/2726:2737, 1/1/2765:2770 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8OI5_021 | 1/1/2636:2638, 1/1/2662:2664, 1/1/2673:2678 | No text annotation | homologous J3_8C3A_010 NA | |
| J3_8OI5_022 | 1/1/2858:2861, 1/1/2886:2888, 1/1/2902:2908 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8OI5_023 | 1/1/3138:3146, 1/1/3177:3185, 1/1/3230:3247 | No text annotation | ||
| J3_8OI5_024 | 1/1/3263:3264, 1/1/3280:3283, 1/1/3353:3355 | No text annotation | homologous J3_8C3A_058 NA | |
| J3_8OI5_025 | 1/3/9:14, 1/3/66:67, 1/3/111:112 | No text annotation J3_12003.2 | ||
| J3_8OI5_026 | 1/4/44:45, 1/4/58:64, 1/4/96:100 | No text annotation | homologous J3_8P9A_067 J3_35667.2 | |
| J3_8OI5_027 | 1/AS/112:122, 1/AS/148:157, 1/AS/263:267 | No text annotation | homologous J3_8C3A_001 NA | |
| J3_8OI5_028 | 1/AS/112:123, 1/AS/143:157, 1/AS/263:267 | No text annotation | ||
| J3_8OI5_029 | 1/AS/184:188, 1/AS/204:213, 1/AS/225:230 | No text annotation | homologous J3_8C3A_046 NA | |
| J3_8OI5_030 | 1/AS/340:356, 1/AS/363:368, 1/AU/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8OI5_031 | 1/AS/369:376, 1/AS/403:404, 1/AU/19:20 | No text annotation | geometric J3_8C3A_048 NA | |
| J3_8OI5_032 | 1/AS/369:379, 1/AS/390:404, 1/AU/19:20 | No text annotation | homologous J3_8C3A_049 NA | |
| J3_8OI5_033 | 1/AS/436:439, 1/AS/488:490, 1/AS/616:621 | No text annotation | homologous J3_8C3A_002 NA | |
| J3_8OI5_034 | 1/AS/497:498, 1/AS/586:595, 1/AS/604:609 | No text annotation | homologous J3_8C3A_050 NA | |
| J3_8OI5_035 | 1/AS/810:816, 1/AS/901:903, 1/AS/919:922 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8OI5_036 | 1/AS/825:827, 1/AS/859:863, 1/AS/888:891 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8OI5_037 | 1/AS/982:983, 1/AS/1058:1062, 1/AS/1088:1094 | No text annotation | homologous J3_8C3A_051 NA | |
| J3_8OI5_038 | 1/AS/1475:1481, 1/AS/1853:1855, 1/AS/1867:1870 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8OI5_039 | 1/AS/1484:1487, 1/AS/1833:1839, 1/AS/1848:1850 | No text annotation | homologous J3_8C3A_007 NA | |
| J3_8OI5_041 | 1/AS/1533:1538, 1/AS/1547:1556, 1/AS/1574:1580 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_8OI5_086 | 1/AS/1627:1628, 1/AS/1637:1641, 1/AS/1806:1807 | No text annotation | homologous J3_8CRE_017 J3_75962.2 | |
| J3_8OI5_043 | 1/AS/1650:1654, 1/AS/1787:1788, 1/AS/1792:1797 | No text annotation | homologous J3_8C3A_055 NA | |
| J3_8OI5_044 | 1/AS/2410:2413, 1/AS/2490:2495, 1/AS/2562:2569 | No text annotation | homologous J3_8C3A_008 NA | |
| J3_8OI5_045 | 1/AS/2507:2510, 1/AS/2525:2540, 1/AS/2550:2553 | No text annotation | homologous J3_8C3A_009 NA | |
| J3_8OI5_046 | 1/AS/2623:2625, 1/AS/2726:2737, 1/AS/2765:2770 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8OI5_047 | 1/AS/2636:2638, 1/AS/2662:2664, 1/AS/2673:2678 | No text annotation | homologous J3_8P9A_062 J3_61124.2 | |
| J3_8OI5_048 | 1/AS/2858:2861, 1/AS/2886:2888, 1/AS/2902:2908 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8OI5_049 | 1/AS/3138:3146, 1/AS/3177:3185, 1/AS/3230:3247 | No text annotation | ||
| J3_8OI5_050 | 1/AS/3263:3264, 1/AS/3280:3283, 1/AS/3353:3355 | No text annotation | homologous J3_8C3A_058 NA | |
| J3_8OI5_051 | 1/AT/9:14, 1/AT/66:67, 1/AT/111:112 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_8OI5_052 | 1/AU/44:45, 1/AU/58:64, 1/AU/96:100 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_8OI5_053 | 1/B/41:42, 1/B/431:437, 1/B/462:464 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8OI5_054 | 1/B/41:48, 1/B/429:437, 1/B/462:464 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8OI5_055 | 1/B/210:226, 1/B/235:241, 1/B/248:251 | No text annotation | homologous J3_8C3A_084 NA | |
| J3_8OI5_056 | 1/B/631:633, 1/B/846:851, 1/B/947:951 | No text annotation | homologous J3_8C3A_034 NA | |
| J3_8OI5_057 | 1/B/745:748, 1/B/758:760, 1/B/769:774 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_8OI5_058 | 1/B/866:870, 1/B/912:921, 1/B/928:932 | No text annotation | homologous J3_8C3A_036 NA | |
| J3_8OI5_059 | 1/B/1022:1024, 1/B/1064:1068, 1/B/1075:1079 | No text annotation | homologous J3_8C3A_037 NA | |
| J3_8OI5_060 | 1/B/1146:1149, 1/B/1568:1574, 1/B/1596:1603 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8OI5_061 | 1/B/1153:1156, 1/B/1454:1456, 1/B/1561:1564 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8OI5_062 | 1/B/1165:1172, 1/B/1183:1194, 1/B/1440:1444 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8OI5_063 | 1/B/1200:1205, 1/B/1248:1252, 1/B/1428:1434 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8OI5_064 | 1/B/1267:1273, 1/B/1312:1317, 1/B/1405:1411 | No text annotation | homologous J3_8C3A_042 NA | |
| J3_8OI5_065 | 1/B/1278:1279, 1/B/1288:1291, 1/B/1303:1307 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8OI5_066 | 1/B/1321:1323, 1/B/1372:1375, 1/B/1398:1401 | No text annotation | geometric J3_8C3A_043 NA | |
| J3_8OI5_067 | 1/B/1321:1323, 1/B/1372:1377, 1/B/1393:1401 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8OI5_068 | 1/B/1456:1460, 1/B/1520:1527, 1/B/1558:1561 | No text annotation | homologous J3_8C3A_044 NA | |
| J3_8OI5_069 | 1/CM/41:42, 1/CM/431:437, 1/CM/462:464 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8OI5_070 | 1/CM/41:48, 1/CM/429:437, 1/CM/462:464 | No text annotation | homologous J3_8C3A_083 NA | |
| J3_8OI5_071 | 1/CM/210:226, 1/CM/235:241, 1/CM/248:251 | No text annotation | homologous J3_8C3A_084 NA | |
| J3_8OI5_072 | 1/CM/631:633, 1/CM/846:851, 1/CM/947:951 | No text annotation | homologous J3_8C3A_034 NA | |
| J3_8OI5_073 | 1/CM/745:748, 1/CM/758:760, 1/CM/769:774 | No text annotation | homologous J3_8C3A_035 NA | |
| J3_8OI5_074 | 1/CM/866:870, 1/CM/912:921, 1/CM/928:932 | No text annotation | homologous J3_8C3A_036 NA | |
| J3_8OI5_075 | 1/CM/1022:1024, 1/CM/1064:1068, 1/CM/1075:1079 | No text annotation | homologous J3_8C3A_037 NA | |
| J3_8OI5_076 | 1/CM/1146:1149, 1/CM/1568:1574, 1/CM/1596:1603 | No text annotation | homologous J3_8C3A_038 NA | |
| J3_8OI5_077 | 1/CM/1153:1156, 1/CM/1454:1456, 1/CM/1561:1564 | No text annotation | homologous J3_8C3A_039 NA | |
| J3_8OI5_078 | 1/CM/1165:1172, 1/CM/1183:1194, 1/CM/1440:1444 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8OI5_079 | 1/CM/1200:1205, 1/CM/1248:1252, 1/CM/1428:1434 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8OI5_080 | 1/CM/1267:1273, 1/CM/1312:1317, 1/CM/1405:1411 | No text annotation | homologous J3_8C3A_042 NA | |
| J3_8OI5_081 | 1/CM/1278:1279, 1/CM/1288:1291, 1/CM/1303:1307 | No text annotation | homologous J3_8C3A_085 NA | |
| J3_8OI5_082 | 1/CM/1321:1323, 1/CM/1372:1375, 1/CM/1398:1401 | No text annotation | geometric J3_8C3A_043 NA | |
| J3_8OI5_083 | 1/CM/1321:1323, 1/CM/1372:1377, 1/CM/1393:1401 | No text annotation | homologous J3_8C3A_086 NA | |
| J3_8OI5_084 | 1/CM/1456:1460, 1/CM/1520:1527, 1/CM/1558:1561 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8OI5_001 | 1/1/111:112, 1/1/267:272, 1/1/293:299, 1/1/316:319 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_8OI5_002 | 1/1/184:188, 1/1/204:207, 1/1/211:213, 1/1/225:230 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_8OI5_003 | 1/1/1447:1453, 1/1/1471:1472, 1/1/1873:1876, 1/1/2330:2331 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_8OI5_004 | 1/1/1488:1492, 1/1/1516:1521, 1/1/1610:1611, 1/1/1825:1832 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_8OI5_005 | 1/1/1670:1671, 1/1/1689:1690, 1/1/1748:1749, 1/1/1768:1769 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_8OI5_006 | 1/1/2108:2112, 1/1/2124:2128, 1/1/2164:2168, 1/1/2295:2300 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8OI5_007 | 1/1/2170:2172, 1/1/2226:2227, 1/1/2245:2254, 1/1/2288:2293 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8OI5_008 | 1/1/2626:2630, 1/1/2684:2688, 1/1/2712:2714, 1/1/2723:2725 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8OI5_009 | 1/1/2982:2984, 1/1/3014:3015, 1/1/3070:3072, 1/1/3106:3108 | No text annotation | homologous J4_8C3A_009 NA | |
| J4_8OI5_010 | 1/AS/111:112, 1/AS/267:272, 1/AS/293:299, 1/AS/316:319 | No text annotation | homologous J4_8C3A_001 NA | |
| J4_8OI5_011 | 1/AS/184:188, 1/AS/204:207, 1/AS/211:213, 1/AS/225:230 | No text annotation | homologous J4_8C3A_002 NA | |
| J4_8OI5_012 | 1/AS/1447:1453, 1/AS/1471:1472, 1/AS/1873:1876, 1/AS/2330:2331 | No text annotation | homologous J4_8C3A_003 NA | |
| J4_8OI5_013 | 1/AS/1488:1492, 1/AS/1516:1521, 1/AS/1610:1611, 1/AS/1825:1832 | No text annotation | homologous J4_8C3A_004 NA | |
| J4_8OI5_014 | 1/AS/1670:1671, 1/AS/1689:1690, 1/AS/1748:1749, 1/AS/1768:1769 | No text annotation | homologous J4_8C3A_005 NA | |
| J4_8OI5_015 | 1/AS/2108:2112, 1/AS/2124:2128, 1/AS/2164:2168, 1/AS/2295:2300 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8OI5_016 | 1/AS/2170:2172, 1/AS/2226:2227, 1/AS/2245:2254, 1/AS/2288:2293 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8OI5_017 | 1/AS/2626:2630, 1/AS/2684:2688, 1/AS/2712:2714, 1/AS/2723:2725 | No text annotation | homologous J4_8C3A_008 NA | |
| J4_8OI5_018 | 1/AS/2982:2984, 1/AS/3014:3015, 1/AS/3070:3072, 1/AS/3106:3108 | No text annotation | homologous J4_8C3A_009 NA | |
| J4_8OI5_019 | 1/B/99:107, 1/B/305:307, 1/B/355:359, 1/B/381:382 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8OI5_020 | 1/B/620:622, 1/B/960:965, 1/B/1006:1017, 1/B/1088:1089 | No text annotation | homologous J4_8C3A_022 NA | |
| J4_8OI5_021 | 1/CM/99:107, 1/CM/305:307, 1/CM/355:359, 1/CM/381:382 | No text annotation | homologous J4_8C3A_021 NA | |
| J4_8OI5_022 | 1/CM/620:622, 1/CM/960:965, 1/CM/1006:1017, 1/CM/1088:1089 | No text annotation | homologous J4_8C3A_022 NA | |
| J5_8OI5_001 | 1/1/19:21, 1/4/35:42, 1/4/102:107, 1/4/115:116, 1/4/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8OI5_002 | 1/1/656:661, 1/1/795:798, 1/1/937:940, 1/1/1371:1372, 1/1/1427:1433 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8OI5_003 | 1/1/673:676, 1/1/700:704, 1/1/711:719, 1/1/745:747, 1/1/778:783 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_8OI5_004 | 1/1/1902:1910, 1/1/1934:1935, 1/1/2087:2088, 1/1/2092:2100, 1/1/2309:2311 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8OI5_005 | 1/1/2377:2384, 1/1/2787:2795, 1/1/2839:2848, 1/1/2923:2929, 1/1/2947:2952 | No text annotation | ||
| J5_8OI5_006 | 1/1/2394:2397, 1/1/2583:2586, 1/1/2599:2600, 1/1/2622:2623, 1/1/2770:2776 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8OI5_007 | 1/AS/19:21, 1/AU/35:42, 1/AU/102:107, 1/AU/115:116, 1/AU/137:139 | No text annotation | homologous J5_8C3A_001 NA | |
| J5_8OI5_008 | 1/AS/656:661, 1/AS/795:798, 1/AS/937:940, 1/AS/1371:1372, 1/AS/1427:1433 | No text annotation | homologous J5_8C3A_002 NA | |
| J5_8OI5_009 | 1/AS/673:676, 1/AS/700:704, 1/AS/711:719, 1/AS/745:747, 1/AS/778:783 | No text annotation | homologous J5_8C3A_003 NA | |
| J5_8OI5_010 | 1/AS/1902:1910, 1/AS/1934:1935, 1/AS/2087:2088, 1/AS/2092:2100, 1/AS/2309:2311 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8OI5_011 | 1/AS/2377:2384, 1/AS/2787:2795, 1/AS/2839:2848, 1/AS/2923:2929, 1/AS/2947:2952 | No text annotation | ||
| J5_8OI5_012 | 1/AS/2394:2397, 1/AS/2583:2586, 1/AS/2599:2600, 1/AS/2622:2623, 1/AS/2770:2776 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8OI5_013 | 1/B/31:35, 1/B/471:477, 1/B/507:514, 1/B/534:544, 1/B/590:593 | No text annotation | ||
| J5_8OI5_014 | 1/B/54:57, 1/B/90:97, 1/B/384:386, 1/B/407:409, 1/B/420:424 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8OI5_015 | 1/B/634:639, 1/B/691:697, 1/B/724:729, 1/B/791:801, 1/B/839:845 | No text annotation | ||
| J5_8OI5_016 | 1/CM/31:35, 1/CM/471:477, 1/CM/507:512, 1/CM/541:544, 1/CM/590:593 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8OI5_017 | 1/CM/31:35, 1/CM/471:477, 1/CM/507:514, 1/CM/534:544, 1/CM/590:593 | No text annotation | ||
| J5_8OI5_018 | 1/CM/54:57, 1/CM/90:97, 1/CM/384:386, 1/CM/407:409, 1/CM/420:424 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8OI5_022 | 1/CM/124:140, 1/CM/171:180, 1/CM/201:202, 1/CM/261:263, 1/CM/287:291 | No text annotation | ||
| J5_8OI5_023 | 1/CM/124:140, 1/CM/171:180, 1/CM/201:202, 1/CM/261:266, 1/CM/285:291 | No text annotation | ||
| J5_8OI5_021 | 1/CM/634:639, 1/CM/691:697, 1/CM/724:729, 1/CM/791:801, 1/CM/839:845 | No text annotation | ||
| J6_8OI5_001 | 1/1/21:26, 1/1/57:67, 1/1/74:78, 1/1/105:109, 1/1/321:331, 1/4/32:35 | No text annotation | ||
| J6_8OI5_002 | 1/1/2394:2397, 1/1/2583:2586, 1/1/2599:2600, 1/1/2622:2625, 1/1/2726:2737, 1/1/2765:2776 | No text annotation | ||
| J6_8OI5_003 | 1/AS/21:26, 1/AS/57:67, 1/AS/74:78, 1/AS/105:109, 1/AS/321:331, 1/AU/32:35 | No text annotation | ||
| J6_8OI5_004 | 1/AS/2394:2397, 1/AS/2583:2586, 1/AS/2599:2600, 1/AS/2622:2625, 1/AS/2726:2737, 1/AS/2765:2776 | No text annotation | ||
| J7_8OI5_001 | 1/1/945:950, 1/1/963:964, 1/1/1110:1113, 1/1/1137:1142, 1/1/1153:1157, 1/1/1334:1335, 1/1/1361:1366 | No text annotation | ||
| J7_8OI5_002 | 1/AS/945:950, 1/AS/963:964, 1/AS/1110:1113, 1/AS/1137:1142, 1/AS/1153:1157, 1/AS/1334:1335, 1/AS/1361:1366 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8OI5_016 | No text annotation | ||
| J3_8OI5_040 | No text annotation | ||
| J3_8OI5_042 | No text annotation | ||
| J5_8OI5_019 | No text annotation | ||
| J5_8OI5_020 | No text annotation |
Coloring options: