HL_8OI5_013
3D structure
- PDB id
- 8OI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 8OI5|1|1|C|646
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8OI5_013 not in the Motif Atlas
- Homologous match to HL_8C3A_014
- Geometric discrepancy: 0.045
- The information below is about HL_8C3A_014
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8OI5|1|1|U|638
8OI5|1|1|C|639
8OI5|1|1|U|640
8OI5|1|1|U|641
8OI5|1|1|G|642
8OI5|1|1|A|643
8OI5|1|1|A|644
8OI5|1|1|A|645
8OI5|1|1|C|646
8OI5|1|1|A|647
Current chains
- Chain 1
- 25S
Nearby chains
- Chain AB
- 60S ribosomal protein L28
- Chain AF
- 60S ribosomal protein L32
- Chain k
- 60S ribosomal protein L3
Coloring options: