HL_8OI5_015

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_015 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0388

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OI5|1|1|U|705
8OI5|1|1|G|706
8OI5|1|1|A|707
8OI5|1|1|A|708
8OI5|1|1|A|709
8OI5|1|1|G|710

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AJ

60S ribosomal protein L36

Chain t

60S ribosomal protein L13

Chain y

60S ribosomal protein L18-A