HL_8OI5_021

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8OI5|1|1|C|955, 8OI5|1|1|A|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_021 not in the Motif Atlas

Homologous match to HL_8C3A_022

Geometric discrepancy: 0.0567

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8OI5|1|1|C|954
8OI5|1|1|C|955
8OI5|1|1|U|956
8OI5|1|1|C|957
8OI5|1|1|A|958
8OI5|1|1|G|959

Current chains

Chain 1

25S

Nearby chains

Chain AB

60S ribosomal protein L28

Chain AC

60S ribosomal protein L29

Chain AP

60S ribosomal protein L42-B