HL_8OI5_033

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

8OI5|1|1|U|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_033 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.0563

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OI5|1|1|G|1676
8OI5|1|1|U|1677
8OI5|1|1|U|1678
8OI5|1|1|A|1679
8OI5|1|1|U|1680
8OI5|1|1|C|1681
8OI5|1|1|U|1682
8OI5|1|1|U|1683
8OI5|1|1|U|1684

Current chains

Chain 1

25S

Nearby chains

Chain 5

60S ribosomal protein L22-B

Chain z

60S ribosomal protein L19-A