HL_8OI5_044

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8OI5|1|1|A|2234

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_044 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.0958

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8OI5|1|1|G|2231
8OI5|1|1|U|2232
8OI5|1|1|A|2233
8OI5|1|1|A|2234
8OI5|1|1|C|2235
8OI5|1|1|U|2236
8OI5|1|1|A|2237
8OI5|1|1|U|2238
8OI5|1|1|G|2239
8OI5|1|1|A|2240
8OI5|1|1|C|2241

Current chains

Chain 1

25S

Nearby chains

Chain B

Small subunit ribosomal RNA; SSU rRNA

Chain g

40S ribosomal protein S30