HL_8OI5_116

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

8OI5|1|AS|G|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_116 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.0534

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8OI5|1|AS|A|2142
8OI5|1|AS|G|2143
8OI5|1|AS|A|2144
8OI5|1|AS|A|2145
8OI5|1|AS|A|2146
8OI5|1|AS|G|2147
8OI5|1|AS|U|2148

Current chains

Chain AS

25S

Nearby chains

Chain AW

60S ribosomal protein L2-B

Chain BC

60S ribosomal protein L8

Chain BI

60S ribosomal protein L15-A