HL_8OI5_123

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8OI5|1|AS|G|2590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_123 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.0584

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8OI5|1|AS|C|2588
8OI5|1|AS|U|2589
8OI5|1|AS|G|2590
8OI5|1|AS|G|2591
8OI5|1|AS|G|2592
8OI5|1|AS|G|2593
8OI5|1|AS|C|2594
8OI5|1|AS|G|2595
8OI5|1|AS|G|2596

Current chains

Chain AS

25S

Nearby chains

Chain BE

60S ribosomal protein L10

Chain BW

60S ribosomal protein L29