HL_8OI5_136

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8OI5|1|AS|G|3088, 8OI5|1|AS|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_136 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0751

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8OI5|1|AS|C|3082
8OI5|1|AS|U|3083
8OI5|1|AS|G|3084
8OI5|1|AS|A|3085
8OI5|1|AS|A|3086
8OI5|1|AS|C|3087
8OI5|1|AS|G|3088
8OI5|1|AS|C|3089
8OI5|1|AS|C|3090
8OI5|1|AS|U|3091
8OI5|1|AS|C|3092
8OI5|1|AS|U|3093
8OI5|1|AS|A|3094
8OI5|1|AS|A|3095
8OI5|1|AS|G|3096

Current chains

Chain AS

25S

Nearby chains

Chain BD

60S ribosomal protein L9-B

Chain BJ

Ribosomal protein L13

Chain CH

60S ribosomal protein L40-B