HL_8OI5_139

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAUACGAC

Length

9 nucleotides

Bulged bases

8OI5|1|AS|C|3269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_139 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0574

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8OI5|1|AS|G|3268
8OI5|1|AS|C|3269
8OI5|1|AS|A|3270
8OI5|1|AS|U|3271
8OI5|1|AS|A|3272
8OI5|1|AS|C|3273
8OI5|1|AS|G|3274
8OI5|1|AS|A|3275
8OI5|1|AS|C|3276

Current chains

Chain AS

25S

Nearby chains

Chain AX

60S ribosomal protein L3

Chain BK

Ribosomal protein L22