HL_8OI5_140

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUG

Length

4 nucleotides

Bulged bases

8OI5|1|AS|U|3316

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_140 not in the Motif Atlas

Homologous match to HL_8P9A_182

Geometric discrepancy: 0.4536

The information below is about HL_8P9A_182

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8OI5|1|AS|C|3315
8OI5|1|AS|U|3316
8OI5|1|AS|U|3317
8OI5|1|AS|G|3318

Current chains

Chain AS

25S

Nearby chains

Chain CV

40S ribosomal protein S8