HL_8OI5_194

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCCUUUUGG

Length

9 nucleotides

Bulged bases

8OI5|1|CM|U|490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_194 not in the Motif Atlas

Homologous match to HL_8C3A_204

Geometric discrepancy: 0.1174

The information below is about HL_8C3A_204

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.5

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8OI5|1|CM|C|487
8OI5|1|CM|C|488
8OI5|1|CM|C|489
8OI5|1|CM|U|490
8OI5|1|CM|U|491
8OI5|1|CM|U|492
8OI5|1|CM|U|493
8OI5|1|CM|G|494
8OI5|1|CM|G|495

Current chains

Chain CM

18S

Nearby chains