HL_8OI5_202

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_202 not in the Motif Atlas

Homologous match to HL_8C3A_212

Geometric discrepancy: 0.0412

The information below is about HL_8C3A_212

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8OI5|1|CM|C|922
8OI5|1|CM|G|923
8OI5|1|CM|A|924
8OI5|1|CM|A|925
8OI5|1|CM|A|926
8OI5|1|CM|G|927

Current chains

Chain CM

18S

Nearby chains

Chain DA

40S ribosomal protein S13

Chain DN

40S ribosomal protein S26