HL_8OI5_213

3D structure

PDB id

8OI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OI5_213 not in the Motif Atlas

Homologous match to HL_8C3A_223

Geometric discrepancy: 0.0442

The information below is about HL_8C3A_223

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8OI5|1|CM|C|1488
8OI5|1|CM|G|1489
8OI5|1|CM|A|1490
8OI5|1|CM|G|1491
8OI5|1|CM|A|1492
8OI5|1|CM|G|1493

Current chains

Chain CM

18S

Nearby chains

Chain DF

40S ribosomal protein S18-B

Chain DG

40S ribosomal protein S19-A