HL_8OIN_010

3D structure

PDB id

8OIN (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8OIN_010 not in the Motif Atlas

Homologous match to HL_4LFB_016

Geometric discrepancy: 0.1324

The information below is about HL_4LFB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8OIN|1|AA|C|376
8OIN|1|AA|G|377
8OIN|1|AA|A|378
8OIN|1|AA|A|379
8OIN|1|AA|A|380
8OIN|1|AA|G|381

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AL

28S ribosomal protein S15, mitochondrial

Chain AQ

28S ribosomal protein S21, mitochondrial

Chain Ac

Coiled-coil-helix-coiled-coil-helix domain containing 1